SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1524

Length: 341 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1524
GGCAATTATTGTGTCTTGGGTGACTCCTGCAGAGATTGGATCCAGTGAGGTGTTTTATGGCACAACAGAGCATAATTATGATCATTCTGCAGAAGGCTCAGTAACACAATACACATTTTACAACTATACATCTGGTTTCATTCATCATTGTCTTATTGATGGCCTTGAGTATAATAAGAAGTACTATTACAAAGTTGGGAATGGGAGTTCTGCACGAGAGTTTTGGTTTTTCACACCTCCAAAAATTGACCCTGATGCTGCCTATAAGTTTGGAATAATAGGGGACCTTGGACAAACGTTCCATTCCCTTTCAACTTTTTGAGCATTATTTGAAAAATCCT

Ace file of the UniGene biog3_v1.0_unigene1524 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11905	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Acid phosphatase n=4 Tax=Oryza sativa RepID=Q67WU6_ORYSJ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	purple acid phosphatase-like protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	83%
Blast2go	Riboflavin metabolism	00740		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	83%
Blast2go	metal ion binding	GO:0046872	Molecular Function	83%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	83%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	83%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 299 aas, your sequence is shorter than subject: 107 - 517

Fln protein: AIIVSWVTPAEIGSSEVFYGTTEHNYDHSAEGSVTQYTFYNYTSGFIHHCLIDGLEYNKKYYYKVGNGSSAREFWFFTPPKIDPDAAYKFGIIGDLGQTFHSLSTF*

Protein Length: 108

Fln nts: GGCAATTATTGTGTCTTGGGTGACTCCTGCAGAGATTGGATCCAGTGAGGTGTTTTATGGCACAACAGAGCATAATTATGATCATTCTGCAGAAGGCTCAGTAACACAATACACATTTTACAACTATACATCTGGTTTCATTCATCATTGTCTTATTGATGGCCTTGAGTATAATAAGAAGTACTATTACAAAGTTGGGAATGGGAGTTCTGCACGAGAGTTTTGGTTTTTCACACCTCCAAAAATTGACCCTGATGCTGCCTATAAGTTTGGAATAATAGGGGACCTTGGACAAACGTTCCATTCCCTTTCAACTTTTTGAGCATTATTTGAAAAATCCT

Fln Alignment:

Contig1524___AIIVSWVTPAEIGSSEVFYGTTEHNYDHSAEGSVTQYTFYNYTSGFIHHCLIDGLEYNXXXXXKVGNGSSAREFWFFTPPKIDPDAAYKFGIIGDLGQTFHSLSTF
A9NVR5_________________AVIVSWVTSAEPGSSEVFYDTVEHNYKYRAKGNITTYTFFNYTSGFIHHCLIIDLEYDTKYYYKIGNESSAREFWFSTPPKIAPDAAYTFGIIGDMGQTFNSLSTF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain