SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1521

Length: 535 nt

UniGene Fasta

>biog3_v1.0_unigene1521
GGGATCCAGAGGTTTTTGTCCGCACCCTGCAGGCCCAAGTTCTCAATGCTGTTCTACCTATTTGGAGCAATCCAATGTTTTGTCGCTGCAGTCCATCATTGATTACCTCTGTTGTTTCCATTATTACCCATGTATACACTGCCATAGGTGATGTTAAAGGAAGCAGAAATGGCATTCCTGGAAGCACAGGTCAACGTTTTAGAGGTCATCCACCTGATGAGGCTGCTATTTCTATGATGGTTGACATGGGATTTCCAAGGTCCAGGGCAGAGGAAGCATTGAGGCGTGTTGAAACAAATAGTGTTGAACTGGCTATGGAGTGGCTCTTTAGTCATCCCGAAGAGCCAGCGCAAAAGATGATGAACTTGCCCAAGCTCTTGCCTTGTCACTGGGTAATTCTGAGGCTCCCAAAGACAATGCCAATGAAAAAGGAAGAGAGGTTTCTTATGAAGAGAAACCTCTAGAAAATCCTCCCGTTGAGGATATCTTAAGTACATGTATGAATCTGTTGCAAAGTACAGATGCGATTGACATT

Ace file of the UniGene biog3_v1.0_unigene1521

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene308	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Contains similarity to ubiquitin carboxyl-terminal hydrolase 14 gb\|Z35927 from S. cerevisiae [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	ubiquitin-protein ligase 1	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	68%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	68%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	68%
Blast2go	membrane	GO:0016020	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%
Blast2go	cytosol	GO:0005829	Cellular Component	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	68%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7V4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 89 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 130 - 219

Fln protein: MFCRCSPSLITSVVSIITHVYTAIGDVKGSRNGIPGSTGQRFRGHPPDEAAISMMVDMGFPRSRAEEALRRVETNSVELAMEWLFSHPEEPAQKMMNLPKLLPCHWVILRLPKTMPMKKEERFLMKRNL*

Protein Length: 131

Fln nts: GGGATCCAGAGGTTTTTGTCCGCACCCTGCAGGCCCAAGTTCTCAATGCTGTTCTACCTATTTGGAGCAATCCA_-_ATGTTTTGTCGCTGCAGTCCATCATTGATTACCTCTGTTGTTTCCATTATTACCCATGTATACACTGCCATAGGTGATGTTAAAGGAAGCAGAAATGGCATTCCTGGAAGCACAGGTCAACGTTTTAGAGGTCATCCACCTGATGAGGCTGCTATTTCTATGATGGTTGACATGGGATTTCCAAGGTCCAGGGCAGAGGAAGCATTGAGGCGTGTTGAAACAAATAGTGTTGAACTGGCTATGGAGTGGCTCTTTAGTCATCCCGAAGAGCCAGCGCAAAAGATGATGAACTTGCCCAAGCTCTTGCCTTGTCACTGGGTAATTCTGAGGCTCCCAAAGACAATGCCAATGAAAAAGGAAGAGAGGTTTCTTATGAAGAGAAACCTCTAGAAAATCCTCCCGTTGAGGATATCTTAAGTACATGTATGAATCTGTTGCAAAGTACAGATGCGATTGACATT

Fln Alignment:

Contig1521___RGHPPDEAAISMMVDMGFPRSRAEEALRRVETNSVELAMEWLFSHPEEP
D5A7V4_________________RGPSASEAIVSQLAAMGFPRLHCEKAAINTSNTGVEDAMNWLLSHTEDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain