SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1489

Length: 455 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1489
ACAGCTATTACAACATCTTGCTGAGACTGACAACTCAAGGAGAGGTGCTCCGCCTGCTGCACAATCTGTTATAGAGCAGTTGCCTTTGATTATTATTAGGCAGGCACATGAAGAGGATGGGAGTTCAGTTTGTGCCATCTGTAAAGATTCTCTAGCACTTGGGGACCAAGCCAAGCAGTTTCCCTGCATGCACTTGTATCATCCCAACTGTATTTTGCCATGGCTAGGCGCTAGGAATTCATGTCCTGTGTGCCGCTATGAGCTACCTACAGATGATCCTGAATATGAAGAAGAAAAGTGCAATGCAGTAGTTAGTAGAACTAATCATAACTACCATGGGCAGAACTTCAATCAGGAAACTTCTTCTGAACTGTCTGCTGACACACAGGAATTGGAGAATGTTGGTCTTGAGCAACAACCTTATGCAGAAAGTTTACTCAGAGTGTCTAGACATT

Ace file of the UniGene biog3_v1.0_unigene1489 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1533	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0P5_RICCO	-	-	1.4013e-45	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	zinc finger	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSK8

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 151 - 282

Fln protein: QLLQHLAETDNSRRGAPPAAQSVIEQLPLIIIRQAHEEDGSSVCAICKDSLALGDQAKQFPCMHLYHPNCILPWLGARNSCPVCRYELPTDDPEYEEEKCNAVVSRTNHNYHGQNFNQETSSELSADTQELENVGLEQQPYAESLLRVSRH

Protein Length: 152

Fln nts: ACAGCTATTACAACATCTTGCTGAGACTGACAACTCAAGGAGAGGTGCTCCGCCTGCTGCACAATCTGTTATAGAGCAGTTGCCTTTGATTATTATTAGGCAGGCACATGAAGAGGATGGGAGTTCAGTTTGTGCCATCTGTAAAGATTCTCTAGCACTTGGGGACCAAGCCAAGCAGTTTCCCTGCATGCACTTGTATCATCCCAACTGTATTTTGCCATGGCTAGGCGCTAGGAATTCATGTCCTGTGTGCCGCTATGAGCTACCTACAGATGATCCTGAATATGAAGAAGAAAAGTGCAATGCAGTAGTTAGTAGAACTAATCATAACTACCATGGGCAGAACTTCAATCAGGAAACTTCTTCTGAACTGTCTGCTGACACACAGGAATTGGAGAATGTTGGTCTTGAGCAACAACCTTATGCAGAAAGTTTACTCAGAGTGTCTAGACATT

Fln Alignment:

Contig1489___QLLQHLAETDNSRRGAPPAAQSVIEQLPLIIIRQAHEEDGSSVCAICKDSLALGDQAKQFPCMHLYHPNCILPWLGARNSCPVCRYELPTDDPEYE
C0PSK8_________________QLLQELAESDPGRRGPPPASRASVDALENV---KVSGKDAAAQCAVCKDEFEPGKYAKRMPCNHMYHADCILPWLAQHNSCPVCRYEMPTDDPEYD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
277	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain