SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1442

Length: 529 nt

UniGene Fasta

>biog3_v1.0_unigene1442
CTTGGTCAAGGCTGATCGCTTTGGCTATGTAAAAAGAGCTGTGCATGGTACTAGAATGCTCTCTAATCGATCTGTAAGTGAAATGTATGGGCGAGAGCTAGTTGATCTGCGGAACGAAAATCGATGGGAATTCCTTAATACACTTTTCTCAGTTTCTGAGGCAGTGATGTATATGCAGATGGTTGACAGACTGGATGAAGGAGCCCTACCTCCAGAAATTGGACCTCTTGATTATCAGGGTCTTTACAAGGTGGTAGCCAAAGCTCTCTTCAGAGCACATGTTGAAGGACAGCTAAAGAATGAAATTATAACCGAACCTGAACGCTTTGTGGAGCTAGAACCAGAACTTCCACTGGCACTTTTAGATCAGAAGGAGGCTGGCAAACGTCTTCTTCTCATTACAAACTCAGTATTATCACTACACAAATAAAATGATGAATTATGCTTTCAATAAGTTTCTTCCAAATGACATGGACTGGCGAGATCTTTTTGAGATGGTCATTGTCTCTGCCAAGAAGCCTGAGTTTTT

Ace file of the UniGene biog3_v1.0_unigene1442

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12781	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	5'-nucleotidase, cytosolic II-like n=2 Tax=Oryza sativa Japonica Group RepID=Q5NBD6_ORYSJ	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	80%
Blast2go	cytosolic purine 5 -nucleotidase-like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	5'-nucleotidase.	EC:3.1.3.5	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Nicotinate and nicotinamide metabolism	00760	85%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	85%
Blast2go	5'-nucleotidase activity	GO:0008253	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase	IPR008380	-	0.0	-
Sma3	Purine 5'-nucleotidase	IPR016695	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9EUP7

Fln msg: Separated hits, possible frame ERROR between 409 and 414, Distance to subject end: 199 aas, your sequence is shorter than subject: 176 - 606

Fln protein: LVKADRFGYVKRAVHGTRMLSNRSVSEMYGRELVDLRNENRWEFLNTLFSVSEAVMYMQMVDRLDEGALPPEIGPLDYQGLYKVVAKALFRAHVEGQLKNEIITEPERFVELEPELPLALLDQKEAGKRLLLITNxxxYHYTNKMMNYAFNKFLPNDMDWRDLFEMVIVSAKKPEF

Protein Length: 177

Fln nts: CTTGGTCAAGGCTGATCGCTTTGGCTATGTAAAAAGAGCTGTGCATGGTACTAGAATGCTCTCTAATCGATCTGTAAGTGAAATGTATGGGCGAGAGCTAGTTGATCTGCGGAACGAAAATCGATGGGAATTCCTTAATACACTTTTCTCAGTTTCTGAGGCAGTGATGTATATGCAGATGGTTGACAGACTGGATGAAGGAGCCCTACCTCCAGAAATTGGACCTCTTGATTATCAGGGTCTTTACAAGGTGGTAGCCAAAGCTCTCTTCAGAGCACATGTTGAAGGACAGCTAAAGAATGAAATTATAACCGAACCTGAACGCTTTGTGGAGCTAGAACCAGAACTTCCACTGGCACTTTTAGATCAGAAGGAGGCTGGCAAACGTCTTCTTCTCATTACAAACTCxxxxxxTTATCACTACACAAATAAAATGATGAATTATGCTTTCAATAAGTTTCTTCCAAATGACATGGACTGGCGAGATCTTTTTGAGATGGTCATTGTCTCTGCCAAGAAGCCTGAGTTTTT

Fln Alignment:

Contig1442___LVKADRFGYVKRAVHGTRMLSNRSVSEMYGRELVDLRNENRWEFLNTLFSVSEAVMYMQMVDRLDEGALPPEIGPLDYQGLYKVVAKALFRAHVEGQLKNEIITEPERFVXXXXXXXXXXXDQKEAGKRLLLITNSxxYHYTNKMMNYAFNKFLPNDMDWRDLFEMVIVSAKKPEF
B9EUP7_________________LVKADRFGYIKRAMHGTQMLSTSAVSEIYGRELVDLRKESRWEFLNTLFSVSEAVMFMQMVDKLDQGLVPAELGPLDYKGLYNAVSRALFRAHVEGQLKSEIMAEPERFVEPDPELPLALLDQKEAGKRLLLITNSxxYHYTNKMMNHAFNRFLPNDMAWRDLFEMVIVSARKPEF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
268	25			75	0.996473
269	16	83			0.994512
271			16	83	0.994512
272		83		16	0.994512
336	20	80			0.995493
337		20		80	0.995493
339			80	20	0.995493
340	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain