SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1440

Length: 892 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1440 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1301	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	ZEITLUPE n=1 Tax=Mesembryanthemum crystallinum RepID=Q6UEI5_MESCR	-	-	73%
FL-Next	sp=Adagio-like protein 1; Oryza sativa subsp. japonica (Rice).	-	-	86%
Blast2go	adagio protein 1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	blue light signaling pathway	GO:0009785	Biological Process	88%
Blast2go	response to red light	GO:0010114	Biological Process	88%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	88%
Blast2go	flower development	GO:0009908	Biological Process	88%
Blast2go	entrainment of circadian clock by photoperiod	GO:0043153	Biological Process	88%
Blast2go	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031146	Biological Process	88%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	scavenger receptor activity	GO:0005044	Molecular Function	88%
Blast2go	blue light photoreceptor activity	GO:0009882	Molecular Function	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	PAS	IPR000014	-	-
Sma3	PAS fold	IPR013767	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
275	25			75	0.996473
276		75		25	0.996473
277	75		25		0.996473
278		75		25	0.996473
502	12			87	0.992554
504		87	12		0.992554
549	10		90		0.90298
551			90	10	0.90298
553		90		10	0.90298
620			85	14	0.993533
658	20			80	0.995493
660	20	80			0.995493
661		80		20	0.995493
662		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain