SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1428

Length: 822 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1428

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13426	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor gb\|AAA34161.1\| ATP-dependent protease (CD4B) [Solanum lycopersicum]	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	chaperone protein chloroplastic-like	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-excision repair	GO:0006289	Biological Process	94%
Blast2go	chloroplast organization	GO:0009658	Biological Process	94%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	94%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	94%
Blast2go	protein metabolic process	GO:0019538	Biological Process	94%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	94%
Blast2go	DNA binding	GO:0003677	Molecular Function	94%
Blast2go	nuclease activity	GO:0004518	Molecular Function	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	Tic complex	GO:0031897	Cellular Component	94%
Blast2go	cell wall	GO:0005618	Cellular Component	94%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	94%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG2

Fln msg: Separated hits, possible frame ERROR between 539 and 545, your sequence is shorter than subject: 261 - 323

Fln protein: EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYSEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGARIGFNLDYGEKDSSYTRIKSLVNEEMKQYFRPEFLNRLDEIIVFRQLTKIEVKEISDIMLKEVFERLKQKEIDxxxVTERFRDRVVDEGYSPSYGARPLRRAIMRLLEDCMAEKMLAGEIKAGDSAIIDVDPEGNVTVLNGNSHSSASIPTMVTA*

Protein Length: 262

Fln nts: CAGAGGAGGCAATGATACGGTTGGATATGAGTGAATTTATGGAGAGGCATACTGTCTCAAAATTGATTGGTTCACCCCCAGGATATGTTGGTTACAGTGAAGGAGGACAGCTGACTGAAGCTGTGAGAAGGCGACCCTATACAGTGGTCCTTTTTGATGAGATTGAGAAGGCTCATCCTGATGTATTCAATATGATGCTTCAAATTCTAGAAGATGGAAGATTAACTGATAGTAAGGGTAGAACTGTAGATTTCAAGAACACTCTTTTGATTATGACATCTAATGTAGGAAGCAGCGTGATTGAGAAAGGAGGAGCTAGAATTGGGTTCAATCTTGATTATGGGGAAAAGGACAGCAGTTACACAAGGATTAAGAGTCTTGTGAATGAAGAAATGAAACAATATTTTCGGCCTGAGTTCTTGAATCGTTTGGATGAAATCATTGTGTTCAGGCAGCTCACTAAGATAGAGGTGAAAGAAATATCTGATATTATGCTGAAAGAGGTTTTTGAGCGCCTTAAACAAAAAGAGATTGATCTxxxxxxGGTAACAGAGAGGTTCAGGGACCGGGTTGTTGATGAAGGTTATAGCCCAAGCTATGGTGCGAGACCTTTGCGTAGGGCAATTATGAGGTTGTTAGAAGATTGTATGGCTGAAAAAATGCTTGCTGGTGAAATCAAGGCAGGTGATTCTGCGATAATTGATGTAGATCCTGAAGGCAATGTGACTGTCTTGAATGGAAATTCCCACTCATCAGCATCTATACCCACCATGGTTACTGCCTAGGGAATGCTATAATTGCTTTAaAGCTGGCTAGATGTGTT

Fln Alignment:

Contig1428___EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYSEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGARIGFNLDYGEKDSSYTRIKSLVNEEMKQYFRPEFLNRLDEIIVFRQLTKIEVKEISDIMLKEVFERLKQKEIDLxxVTERFRDRVVDEGYSPSYGARPLRRAIMRLLEDCMAEKMLAGEIKAGDSAIIDVDPEGNVTVLNGNSHSSASIPTMVTA
D5AEG2_________________EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRGIGFQLDYDEKDSSYTRIKSLVNEELKQYFRPEFLNRLDEMIVFRQLTKTEVKEIADIMLREVFERLKTKEIGLxxVTERFTDRVVDEGYSPSYGARPLRRAIMRLLEDSLAEKMLAGEIKEGDSAIVDVDGEGNVIVLNGKTGTAGPSATALAA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
305	12		87		0.992554
307			87	12	0.992554
308	87		12		0.992554
309	87			12	0.992554
395	83		16		0.994512
477	66	33			1.0
479			66	33	1.0
480	66			33	1.0
492	25			75	0.996473
493		25		75	0.996473
496			75	25	0.996473
553	25		75		0.996473
554	75			25	0.996473
752		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain