SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1420

Length: 496 nt

UniGene Fasta

>biog3_v1.0_unigene1420
AATGTACCTTAATCCACAGAAGTATCATGAGCTTTCTTCCAAAGTTGCTGAGGGTTCTAGGGAAGCAACTATTATGTCTGCAATTGAAAAGTTGGATGAAGCTCTAAGGAAGGCAAACATCCCCTATTATGTGTTGTCTGGCAGACCAAAGAGCTTGTACAGCATTCACAAGAAGATGTTGAAGAAGAAGCTGAGCATTGATGAAATTCATGATCTCCGTGGTCTTCGGTTAATTGTCCTGAATGAGGAGGATTGCTATGCTGCTCTGGGACTTGTTCATGAGTTGTGGCCCAGTGTACCCGGGAAACTAAAAGATTACATAAATAATCCAAAACTCAGTCAGTTCAGTAAGCTTGCCCGTGATAACAATACAGCTAGTAAGACTGATGAAGCAGACCGGCTTCATACCATGTTTTTGGCAATGATGGATGTCAGGGTGGTTTTGATTAAGCTGGCTGATAGATTGCATAACATGATGACCCTGGAAGCTTTACCA

Ace file of the UniGene biog3_v1.0_unigene1420

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27907	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	RelA/SpoT-like protein n=1 Tax=Ipomoea nil RepID=A8DD65_IPONI	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	like protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	GTP diphosphokinase.	EC:2.7.6.5	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	72%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	72%
Blast2go	GTP diphosphokinase activity	GO:0008728	Molecular Function	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	-
Sma3	TGS	IPR004095	-	-
Sma3	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	-
Sma3	RelA/SpoT	IPR007685	-	-
Sma3	Beta-grasp domain	IPR012675	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK81

Fln msg: Distance to subject end: 388 aas, your sequence is shorter than subject: 165 - 901

Fln protein: MYLNPQKYHELSSKVAEGSREATIMSAIEKLDEALRKANIPYYVLSGRPKSLYSIHKKMLKKKLSIDEIHDLRGLRLIVLNEEDCYAALGLVHELWPSVPGKLKDYINNPKLSQFSKLARDNNTASKTDEADRLHTMFLAMMDVRVVLIKLADRLHNMMTLEALP

Protein Length: 166

Fln nts: AATGTACCTTAATCCACAGAAGTATCATGAGCTTTCTTCCAAAGTTGCTGAGGGTTCTAGGGAAGCAACTATTATGTCTGCAATTGAAAAGTTGGATGAAGCTCTAAGGAAGGCAAACATCCCCTATTATGTGTTGTCTGGCAGACCAAAGAGCTTGTACAGCATTCACAAGAAGATGTTGAAGAAGAAGCTGAGCATTGATGAAATTCATGATCTCCGTGGTCTTCGGTTAATTGTCCTGAATGAGGAGGATTGCTATGCTGCTCTGGGACTTGTTCATGAGTTGTGGCCCAGTGTACCCGGGAAACTAAAAGATTACATAAATAATCCAAAACTCAGTCAGTTCAGTAAGCTTGCCCGTGATAACAATACAGCTAGTAAGACTGATGAAGCAGACCGGCTTCATACCATGTTTTTGGCAATGATGGATGTCAGGGTGGTTTTGATTAAGCTGGCTGATAGATTGCATAACATGATGACCCTGGAAGCTTTACCA

Fln Alignment:

Contig1420___MYLNPQKYHELSSKVAEGSREAT---------IMSAIEKLDEALRKANIPYYVLSGRPKSLYSIHKKMLKKKLSIDEIHDLRGLRLIVL------------NEEDCYAALGLVHELWPSVPGKLKDYINNPKLSQFSKL
B8LK81_________________MYTNPDKFADLKRRVEQLNKEQEKELSEAKRILVQKIEE-DQFLDFMSMDVEVLSVC-KELYSIYKMLLEREGSINKVNEIAQLRVILKPKQCDRVAPLCSSQQICYHILGLVHGIWTPIPREMKDYIATPKPNGYQSL

SNPs (tot: 3)

Position	A %	C %	T %	Probability
331	33	66		0.997452
334	66		33	0.997452
335	66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain