SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1417

Length: 388 nt

UniGene Fasta

>biog3_v1.0_unigene1417
AATGTTGCATGTAGTGTTGTCATTCCATGCATGTTTGTACCCCTTTTCAAGTCCCAGAGCCAATATCAGCCTACCATTATGGGTTAATGAGATTGGAAATCTTAACAAGGACATCTACTACAGAGATCGGCGTGGATATTCTAGCGATGAGTATCTATCTGCTGGAGTGGATCAAATACCTATCTTATATGGACGTACAGCTGTTGAATGCTATGAAGATTTCATGGTCAGTTTCATAGACAAATTTCAATCACTCATGGGAAATCCAATTCAAGAAATTACTATTGGCCTTGGTCCGTCAGGTGAACTAAGGTACCCTGCCCATCCTTTTTCTGATGGGAGATGGAAGTTCCCTGGTATTGGAGAATTCCAGTGCTATGATAACATT

Ace file of the UniGene biog3_v1.0_unigene1417

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3926	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-amylase [Arabidopsis thaliana] gb\|AAN71908.1\| putative beta-amylase [Arabidopsis thaliana]	-	-	59%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	inactive beta-amylase 4	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	66%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	66%
Blast2go	Metabolic pathways	01100		0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	starch catabolic process	GO:0005983	Biological Process	66%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 129 - 492

Fln protein: MLHVVLSFHACLYPFSSPRANISLPLWVNEIGNLNKDIYYRDRRGYSSDEYLSAGVDQIPILYGRTAVECYEDFMVSFIDKFQSLMGNPIQEITIGLGPSGELRYPAHPFSDGRWKFPGIGEFQCYDNI

Protein Length: 130

Fln nts: AATGTTGCATGTAGTGTTGTCATTCCATGCATGTTTGTACCCCTTTTCAAGTCCCAGAGCCAATATCAGCCTACCATTATGGGTTAATGAGATTGGAAATCTTAACAAGGACATCTACTACAGAGATCGGCGTGGATATTCTAGCGATGAGTATCTATCTGCTGGAGTGGATCAAATACCTATCTTATATGGACGTACAGCTGTTGAATGCTATGAAGATTTCATGGTCAGTTTCATAGACAAATTTCAATCACTCATGGGAAATCCAATTCAAGAAATTACTATTGGCCTTGGTCCGTCAGGTGAACTAAGGTACCCTGCCCATCCTTTTTCTGATGGGAGATGGAAGTTCCCTGGTATTGGAGAATTCCAGTGCTATGATAACATT

Fln Alignment:

Contig1417___LHVVLSFHACLYPFSSPRANISLPLWVNEIGNLNKDIYYRDRRGYSSDEYLSAGVDQIPILYGRTAVECYEDFMVSFIDKFQSLMGNPIQEITIGLGPSGELRYPAHPFSDGRWKFPGIGEFQCYD
A9NVE4_________________VQAVMSFHKCGGNVGDS-VSIPLPKWVVEEIDRDNDLAYTDQWERRNYEYISLGCDNLPVLKGRTPVQCYSDFMRSFKENFTDLMGETVVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
208	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain