SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1405

Length: 328 nt

UniGene Fasta

>biog3_v1.0_unigene1405
AATGTGATTTTTCTACGTGAAAGGCCATGGAGTTCCCAATCACATTACAAAAGAAGTTCTGGATGTTACTAGGGAGTTTTTTCATCGTCCTTCCGAAGAGAAACTTAGAATCAAGATGAGTGCTTCAACAGGACACAGAGGATATCAAAGAGTGGGAGAAAATGTAACAAAAGGGCAACCTGACATGCACGAAGCTATTGATTGTTACAGGGAAATAGGACCAGGGTCCTATGGCCCCCTTGGTAGAGCACTAGAAGGAGCAAATTTGTGGCCAGACTATCCAAAGAGATTTGGGCCACTTATGGAAGATTATGTTAGAACCATGAAG

Ace file of the UniGene biog3_v1.0_unigene1405

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene232	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative flavonol synthase-like protein [Euphorbia esula]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	2-oxoacid-dependent oxidase	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to starvation	GO:0009267	Biological Process	78%
Blast2go	aging	GO:0007568	Biological Process	78%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	iron ion binding	GO:0005506	Molecular Function	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1W5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 177 aas, your sequence is shorter than subject: 109 - 330

Fln protein: M*FFYVKGHGVPNHITKEVLDVTREFFHRPSEEKLRIKMSASTGHRGYQRVGENVTKGQPDMHEAIDCYREIGPGSYGPLGRALEGANLWPDYPKRFGPLMEDYVRTMK

Protein Length: 110

Fln nts: AATGTGATTTTTCTACGTGAAAGGCCATGGAGTTCCCAATCACATTACAAAAGAAGTTCTGGATGTTACTAGGGAGTTTTTTCATCGTCCTTCCGAAGAGAAACTTAGAATCAAGATGAGTGCTTCAACAGGACACAGAGGATATCAAAGAGTGGGAGAAAATGTAACAAAAGGGCAACCTGACATGCACGAAGCTATTGATTGTTACAGGGAAATAGGACCAGGGTCCTATGGCCCCCTTGGTAGAGCACTAGAAGGAGCAAATTTGTGGCCAGACTATCCAAAGAGATTTGGGCCACTTATGGAAGATTATGTTAGAACCATGAAG

Fln Alignment:

Contig1405___FFYVKGHGVPNHITKEVLDVTREFFHRPSEEKLRIKMSASTGHRGYQRVGENVTKGQPDMHEAIDCYREIGPGSYGPLGRALEGANLWPDYPKRFGPLMEDYVRTMK
A9P1W5_________________FFYVKGHGVPNHIAKEVLDVTREFFHRPFEEKLRIKMSASTGHRGYQRVGENVTKGQPDMHEAIDCYREIEPGAYGPLGRALEGANLWPDYPKRFGPIMEDYVRIMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain