SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1404

Length: 486 nt

UniGene Fasta

>biog3_v1.0_unigene1404
AATGTAGATGCTGTGATGTACCTTACATGGACATTCTTTTATCGGCGCTTGGTTATGAATCCTAGCTACTATGATTTGGAGAATACAGAAAGCAGCACTGTGAATGATTACCTATCAAGGTTGGTAACAGATACATTGCAAGACTTGGAAGATGGCGGCTGCATAAAAGTTGATGAAGATAATCTTGTTGAGCCTCTTATGTTGGGCACTGTTGCTTCCCAGTATTATCTTAGCTACAAAACAGTGTCCCTTTTCTCCACAAACATTGGACCTGACACATCGCTTAAGGTCTTATTTCACGTGCTGTGTGGTGCTACAGAATATGATGAGCTGCCGGTCCGTCATAATGAGGAAAAGATAAATGAAGCATTGTCAAAAGAGGTAGAGTATGAAGTTGATAAGAACAGTTTGGATGATCCTCATGTAAAAGCAAACTTGCTGCTTCAGGCACATTTCTCAAGGTTGGAGTTGCCAATCAGTGATTAT

Ace file of the UniGene biog3_v1.0_unigene1404

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3482	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA helicase [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	activating signal cointegrator 1 complex subunit	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	82%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018127	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GT13

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 162 - 1370

Fln protein: NVDAVMYLTWTFFYRRLVMNPSYYDLENTESSTVNDYLSRLVTDTLQDLEDGGCIKVDEDNLVEPLMLGTVASQYYLSYKTVSLFSTNIGPDTSLKVLFHVLCGATEYDELPVRHNEEKINEALSKEVEYEVDKNSLDDPHVKANLLLQAHFSRLELPISDY

Protein Length: 163

Fln nts: AATGTAGATGCTGTGATGTACCTTACATGGACATTCTTTTATCGGCGCTTGGTTATGAATCCTAGCTACTATGATTTGGAGAATACAGAAAGCAGCACTGTGAATGATTACCTATCAAGGTTGGTAACAGATACATTGCAAGACTTGGAAGATGGCGGCTGCATAAAAGTTGATGAAGATAATCTTGTTGAGCCTCTTATGTTGGGCACTGTTGCTTCCCAGTATTATCTTAGCTACAAAACAGTGTCCCTTTTCTCCACAAACATTGGACCTGACACATCGCTTAAGGTCTTATTTCACGTGCTGTGTGGTGCTACAGAATATGATGAGCTGCCGGTCCGTCATAATGAGGAAAAGATAAATGAAGCATTGTCAAAAGAGGTAGAGTATGAAGTTGATAAGAACAGTTTGGATGATCCTCATGTAAAAGCAAACTTGCTGCTTCAGGCACATTTCTCAAGGTTGGAGTTGCCAATCAGTGATTAT

Fln Alignment:

Contig1404___DAVMYLTWTFFYRRLVMNPSYYDLENTESSTVNDYLSRLVTDTLQDLEDGGCIKVDEDNLVEPLMLGTVASQYYLSYKTVSLFSTNIGPDTSLKVLFHVLCGATEYDELPVRHNEEKINEALSKEVEYEVDKNSLDDPHVKANLLLQAHFSRLELPISDY
F6GT13_________________DAMHYLTWTYLFRRLMVNPAYYGLDDTDPEILSSYLSRLVQNTFEDLEDSGCIQMNEDN-VEPMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEENYNEALSAKVPCMVDKNRLDDPHVKANLLFQAHFSQLELPISDY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
385		33	66		0.997452
387			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain