SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1399

Length: 466 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1399
TTGGTTCAGGCGGCATTAGTAGCTTGAAAGGACACAGTCAACGGAGAAATAAATGTCTCAATGACTTTGTTCTCTATATGGTTATATGCCATTGGTTGCCAGTAATTTTAACGCTGTTAATGCTCAATATGAATGGTTTTGGTAGCTCTGCTTCAATTTCTTATTGCATTCTTGTTATGATCAGATTTTGTGGGCATTTCGTTTATGCCAGGTATTGAAGTATATTACCTGCCTTGATAAAACATCACTGTTCTTTCTGTACCATTGGACTTGAACGAACTTTTAATTTTTCCCGGTTCTTTTGGTGTAGTCCAACCCTATTTTAAAGATAATCAAGTACTGTTACTTCTTGGAAGATGAATTTTGAAGGGTTCATTTGTTGTTACACCTTTTGTTTAGGTTGGAGACAACCTATGTATTTAATCATGTTGAGACTTCATGTTTTGGAAATTCAGTTTCACTCCAT

Ace file of the UniGene biog3_v1.0_unigene1399 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2381	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	nucleotide-diphospho-sugar transferase-like protein [Arabidopsis thaliana] emb\|CAB87837.1\| putative protein [Arabidopsis thaliana] dbj\|BAF00425.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE79446.1\| nucleotide-diphospho-sugar transferase-like prote	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	n-acetylglucosaminyltransferase-like protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucuronyl-galactosyl-proteoglycan 4-alpha-N-	EC:2.4.1.223	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycosaminoglycan biosynthesis - heparan sulfate	00534		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	cell-cell adhesion	GO:0016337	Biological Process	83%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	83%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	83%
Blast2go	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity	GO:0001888	Molecular Function	83%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	83%
Blast2go	intrinsic to endoplasmic reticulum membrane	GO:0031227	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	TonB box, conserved site	IPR010916	-	0.0	-
Sma3	EXTL2, alpha-1,4-N-acetylhexosaminyltransferase	IPR015338	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADK4

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 71 and 71, your sequence is shorter than subject: 48 - 327

Fln protein: GSGGISSLKGHSQRRNKCLNDFxxLYGYMPLVASNFNAVNAQYEWFW*

Protein Length: 49

Fln nts: TTGGTTCAGGCGGCATTAGTAGCTTGAAAGGACACAGTCAACGGAGAAATAAATGTCTCAATGACTTTxxxxxxCTATATGGTTATATGCCATTGGTTGCCAGTAATTTTAACGCTGTTAATGCTCAATATGAATGGTTTTGGTAGCTCTGCTTCAATTTCTTATTGCATTCTTGTTATGATCAGATTTTGTGGGCATTTCGTTTATGCCAGGTATTGAAGTATATTACCTGCCTTGATAAAACATCACTGTTCTTTCTGTACCATTGGACTTGAACGAACTTTTAATTTTTCCCGGTTCTTTTGGTGTAGTCCAACCCTATTTTAAAGATAATCAAGTACTGTTACTTCTTGGAAGATGAATTTTGAAGGGTTCATTTGTTGTTACACCTTTTGTTTAGGTTGGAGACAACCTATGTATTTAATCATGTTGAGACTTCATGTTTTGGAAATTCAGTTTCACTCCAT

Fln Alignment:

Contig1399___GSGGISSLKGHSQRRNKCLNDFVSLYGYMPLVASNFNAVNAQYEWFW
D5ADK4_________________GSSGISSLKGHSQRRNECLNDFVSLYGYMPLVASNFNAVNVQYEWFW

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
199		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain