SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1373

Length: 985 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1373

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14329	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter family protein n=1 Tax=Camellia sinensis RepID=F5A834_CAMSI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	abc transporter family protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		81%
Blast2go	Tetracycline biosynthesis	00253		81%
Blast2go	Lysine degradation	00310		81%
Blast2go	Arginine and proline metabolism	00330		81%
Blast2go	Histidine metabolism	00340		81%
Blast2go	Tyrosine metabolism	00350		81%
Blast2go	Benzoate degradation	00362		81%
Blast2go	Lipopolysaccharide biosynthesis	00540		81%
Blast2go	Glycerophospholipid metabolism	00564		81%
Blast2go	Ether lipid metabolism	00565		81%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604		81%
Blast2go	Toluene degradation	00623		81%
Blast2go	Naphthalene degradation	00626		81%
Blast2go	Aminobenzoate degradation	00627		81%
Blast2go	Ethylbenzene degradation	00642		81%
Blast2go	Butanoate metabolism	00650		81%
Blast2go	Methane metabolism	00680		81%
Blast2go	Limonene and pinene degradation	00903		81%
Blast2go	Diterpenoid biosynthesis	00904		81%
Blast2go	Carotenoid biosynthesis	00906		81%
Blast2go	Anthocyanin biosynthesis	00942		81%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		81%
Blast2go	Isoquinoline alkaloid biosynthesis	00950		81%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		81%
Blast2go	Betalain biosynthesis	00965		81%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		81%
Blast2go	Biosynthesis of type II polyketide backbone	01056		81%
Blast2go	Biosynthesis of terpenoids and steroids	01062		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Biosynthesis of secondary metabolites	01110		81%
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	81%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	81%
Blast2go	cuticle development	GO:0042335	Biological Process	81%
Blast2go	response to red light	GO:0010114	Biological Process	81%
Blast2go	response to cold	GO:0009409	Biological Process	81%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	81%
Blast2go	endocytosis	GO:0006897	Biological Process	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	81%
Blast2go	response to far red light	GO:0010218	Biological Process	81%
Blast2go	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	ATPase activity	GO:0016887	Molecular Function	81%
Blast2go	transporter activity	GO:0005215	Molecular Function	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC52

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 32 aas, putative chimeric sequence, your sequence is shorter than subject: 254 - 329

Fln protein: SRLLLVGANGSGKTTLLKILAGKHMVGGKDVVQVLGRSAFHDTSLVCSGELAYLGGSWSKTVGCAGDIPLQGDFCASHMIYGVEGVDPARREKLIELLDIDLGWKMHKVSDGQRRRVQICMNLLHPFKVLLLDEVTVDLDVVARLDLLDFLREECEQRGATIVYATHIFDGLESWVTHVAYIEDGKLKRFEKLSELNEMRNAINLLQVVESWLRAENKDKDNKTPMPATQFKMASQLSEVSPFTSRRHMAYYR*

Protein Length: 255

Fln nts: ATCTAGACTGCTTCTAGTTGGAGCCAATGGGTCAGGTAAGACAACGTTGCTAAAGATTTTGGCGGGCAAGCACATGGTGGGTGGCAAAGATGTAGTTCAGGTGCTGGGTCGTTCTGCTTTTCATGATACTTCTCTGGTGTGTAGTGGCGAGCTTGCTTACTTGGGAGGTTCTTGGAGCAAAACTGTTGGTTGTGCTGGGGATATACCACTGCAAGGCGATTTCTGTGCATCACACATGATTTATGGAGTGGAAGGAGTAGACCCAGCTCGGAGAGAGAAACTAATTGAACTGCTTGATATTGATCTTGGCTGGAAAATGCACAAAGTGTCAGATGGCCAGCGCCGCCGTGTACAGATTTGTATGAATCTTCTTCATCCATTCAAGGTCTTGCTGCTGGATGAGGTGACGGTTGATTTGGATGTTGTGGCGAGATTGGACTTGCTTGATTTTCTTAGGGAAGAGTGTGAACAGAGAGGTGCAACTATTGTTTATGCAACGCATATTTTTGATGGCCTAGAGTCATGGGTTACCCATGTTGCATATATTGAAGATGGAAAATTGAAACGCTTTGAAAAACTATCAGAACTGAATGAAATGAGAAATGCTATTAATTTGCTTCAAGTTGTCGAGTCATGGCTTCGGGCTGAAAACAAAGACAAGGACAACAAAACCCCAATGCCAGCTACCCAGTTCAAGATGGCTTCTCAACTATCAGAAGTTTCACCATTTACTTCAAGGAGGCATATGGCCTATTATCGTTGA___TTATGTGTTTAAGCTGAAAGCTGGCAAAACACATTTATGATTTAATATAGCTTAGTTATACTGCTAATAAAGTTTCAGGTTTATGATTGGAGTATATTCAAATGTGGAGGTAGAAAAATGAATGTACGCGTGCATCTGATTATTGATGTATGCAGAGGAATATCATGGGAAGAGTCGATAATTCTATATTATAATATTATTTAGAGCTTTGGAGGTAGAAAA

Fln Alignment:

Contig1373___RLLLVGANGSGKTTLLKILAGKHMVGGKDVVQVLGRSAFHDTSLVCSGELAYLGGSWSKTVGCAG-DIPLQGDFCASHMIYGVEGVDPARREKLIELLDIDLGWKMHKVSDGQRRRVQICMNLLHPFKXXXXXXXXXXXXXXXXXXXXXFLREECEQRGATIVYATHIFDGLESWVTHVAYIEDGKLKRFEKLSELNEMRNAINLLQVVESWLRAENKDK
D5AC52_________________RCLLVGANGAGKTTILKILGGKHMVE-PHMVRVLGRSAFHDTSLTSSGDLCYLGGEWRRDVAFAGFDVPLQMDISAEKMIFGVHGIEPQRRDRLIKVLGVDLRWRMHNVSDGQRRRVQICMGLLQPFKVLLLDEITVDLDVLARADLLSFLKHECKDRGATIIYATHIFDGLDNWPSHIAYVARGKLQLALPLEEVEEMKE-LSLMRTVEKWLRKEKEEE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
551	14		85		0.993533
552	85	14			0.993533
554			85	14	0.993533
555	85			14	0.993533
590		87		12	0.992554
664		16	83		0.994512
665	16		83		0.994512
666	83			16	0.994512
667		83		16	0.994512
742			80	20	0.995493
743			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain