SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1342

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1342
AAAGTTCATGATCACTTGCAACTTTGATGGTTTCATGCTTTCTATCGTAACTGCAGGGATGTCTCCACAGACATCACCTATCATGGCATTTGTTGAGGTTCTTGCTGCAGGCGTTGTACGTATTGTTGCTCTATGTCTGTTATGGAGTTGGTACAGCACCGTGCATAAATGGCACAATCATCCAAAGAAGTACTCATAGATGCAAGTCCTATATGTAGAGTTGCCGGTTTGCTTCGTTGAAGTAAATATGGGTATATTTGTTGCATGCCTTGTATTCTTGCCATGAACAACATCTCAATTACATTGGAGGATTTGTTTGAAATTTAAATCAAATCTTATAATCGGAAGGGTCGAAAGATTCATCCACCACGAAGCCCAAGTTATATATTTTATTTGAATGCAAAAAAATAGCTCCTTAAACACATT

Ace file of the UniGene biog3_v1.0_unigene1342 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2368	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Short-chain dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RTW7_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	short-chain dehydrogenase reductase family protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	binding	GO:0005488	Molecular Function	77%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN92

Fln msg: your sequence is shorter than subject: 66 - 324

Fln protein: KFMITCNFDGFMLSIVTAGMSPQTSPIMAFVEVLAAGVVRIVALCLLWSWYSTVHKWHNHPKKYS*

Protein Length: 67

Fln nts: AAAGTTCATGATCACTTGCAACTTTGATGGTTTCATGCTTTCTATCGTAACTGCAGGGATGTCTCCACAGACATCACCTATCATGGCATTTGTTGAGGTTCTTGCTGCAGGCGTTGTACGTATTGTTGCTCTATGTCTGTTATGGAGTTGGTACAGCACCGTGCATAAATGGCACAATCATCCAAAGAAGTACTCATAG___ATGCAAGTCCTATATGTAGAGTTGCCGGTTTGCTTCGTTGAAGTAAATATGGGTATATTTGTTGCATGCCTTGTATTCTTGCCATGAACAACATCTCAATTACATTGGAGGATTTGTTTGAAATTTAAATCAAATCTTATAATCGGAAGGGTCGAAAGATTCATCCACCACGAAGCCCAAGTTATATATTTTATTTGAATGCAAAAAAATAGCTCCTTAAACACATT

Fln Alignment:

Contig1342___KFMITCNFDGFMLSIVTAGMSPQTSPIMAFVEVLAAGVVRIVALCLLWSWYSTVHKWHNHPKK
A9NN92_________________KFIITCNFDGFMLSIATAGMSPQTSPIMAFVEVIAAGIVRIVALCLLWSWYSTVHKWHNHQKK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
221	25	75			0.996473
222	25			75	0.996473
225		75		25	0.996473
294		25		75	0.996473
296			75	25	0.996473
297	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain