SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1327

Length: 567 nt

UniGene Fasta

>biog3_v1.0_unigene1327
AATGTCTGAGATCGTGCATAATGGCGATGGATTCCTCATTGAACGTTTCGGCTCGTTCGAGTCATAGGAAGGGCGGGGGGCTTTTGAAGAACCAGCTCGAGCTCGTGAAGAGGAAGGACTGTGATAGATATGAAATTGCACCGATTTCTGAGACTCTGTCGTTCGAGAAGGGTTTTTATCTTTTCATCAGGGCATGCCAGCTCCTGACGCAGAAGACTGAGGGGTCATGTTGGTGGGATTGGCCGGGCCTTCTGGTGCGGGGAAAACTGTTTTCTGTGAGAAGATCTTGAATTTCATGCCAAGCATCATTGCCATTTCCATGGATAATTATAACGATGCCAGCCGAGTCATCGATGGAAACTATGATGATCCCAGGTTGACAGACTATGATACTCTTCTCCAAAACATTCATGATTTAAAAGCTGGAAAAGCTGTGAAGGTTCCCATTTATGATTTTAAGCTCAGTCGTCGTACTGGATACAGAGATGTCGATGTTCCATCATCTAGGATTGTTGTCATTGAGGGTATCTATGCTTTGAGTGAAAGGTTACGCCCGCTATTGGATCT

Ace file of the UniGene biog3_v1.0_unigene1327

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25787	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	Uridine cytidine kinase I, putative n=1 Tax=Ricinus communis RepID=B9RLC2_RICCO	-	-	60%
FL-Next	sp=Phosphoribulokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	uridine-cytidine kinase c-like	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	74%
Blast2go	metabolic process	GO:0008152	Biological Process	74%
Blast2go	catalytic activity	GO:0003824	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Uridine kinase	IPR000764	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-
Sma3	CYTH domain	IPR008172	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC2

Fln msg: Distance to subject end: 210 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 113 - 400

Fln protein: MLVGLAGPSGAGKTVFCEKILNFMPSIIAISMDNYNDASRVIDGNYDDPRLTDYDTLLQNIHDLKAGKAVKVPIYDFKLSRRTGYRDVDVPSSRIVVIEGIYALSERLRPLLD

Protein Length: 114

Fln nts: AATGTCTGAGATCGTGCATAATGGCGATGGATTCCTCATTGAACGTTTCGGCTCGTTCGAGTCATAGGAAGGGCGGGGGGCTTTTGAAGAACCAGCTCGAGCTCGTGAAGAGGAAGGACTGTGATAGATATGAAATTGCACCGATTTCTGAGACTCTGTCGTTCGAGAAGGGTTTTTATCTTTTCATCAGGGCATGCCAGCTCCTGACGCAGAAGACTGAGGGGTC_-_ATGTTGGTGGGATTGGCCGGGCCTTCTGGTGCGGGGAAAACTGTTTTCTGTGAGAAGATCTTGAATTTCATGCCAAGCATCATTGCCATTTCCATGGATAATTATAACGATGCCAGCCGAGTCATCGATGGAAACTATGATGATCCCAGGTTGACAGACTATGATACTCTTCTCCAAAACATTCATGATTTAAAAGCTGGAAAAGCTGTGAAGGTTCCCATTTATGATTTTAAGCTCAGTCGTCGTACTGGATACAGAGATGTCGATGTTCCATCATCTAGGATTGTTGTCATTGAGGGTATCTATGCTTTGAGTGAAAGGTTACGCCCGCTATTGGATCT

Fln Alignment:

Contig1327___MLVGLAGPSGAGKTVFCEKILNFM-------------------PSIIAISMDNYNDASRVIDGNYD------DPRLTDYDTLLQNIHDLKAGKAVKVPIYDFKLSRRTGYRDVDVPSSRIVVIEGIYALSE-RLRPLLD
A9NVC2_________________VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRY--GRKDKGVTALDPRANNFDLMYEQVKALKEGKSVMKPIYNHVTGILDPAEQINPP--KILVIEGLHPMFDARVRELLD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
119	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain