SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1313

Length: 956 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1313

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2881	9/16
SustainPine v2.0	sp_v2.0_unigene25785	3/16
SustainPine v2.0	sp_v2.0_unigene28755	4/16

Source	Descriptions	Term	Type	Identity
AutoFact	MA3 domain-containing protein [Arabidopsis thaliana] ref\|NP_001031708.1\| MA3 domain-containing protein [Arabidopsis thaliana] ref\|NP_001190828.1\| MA3 domain-containing protein [Arabidopsis thaliana] gb\|AAL32978.1\| AT4g24800/F6I7_10 [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	73%
Blast2go	ma3 domain-containing protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TEJ7

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 318 - 681

Fln protein: KNGRPKKSGCGGKGTWGGLLDTDGDLHVDRNDPNYDSEEEPYQLVGTTVSQSLEEYKGKVGSIIEEYFATDDVAAAAADLADLGCPSYHHYFVKKLISLAMDRHDREKEMAAVLLSSLYADVIEPEQVSKGFSKLLDSADDLALDIPEAVDILALLVARAVVDDILPPAFLTKTSKSLPEDSKGVEVIQKAEKSYLSAPLHAEIIERRWGGSTHVTVEEVKKKISDLLHEYVESGDKAEACRCIRDLKVRFFHHEVVKRALILAMEQRSAEPLILALLKEAAEEGLITSSQMSKGFGRLADTVDDLSLDIINAKDMFE

Protein Length: 319

Fln nts: AAAAATGGCCGTCCCAAAAAGAGTGGATGTGGTGGCAAAGGCACTTGGGGAGGACTACTCGACACTGATGGGGATTTACACGTTGATCGCAATGACCCAAACTATGATAGTGAGGAGGAACCTTATCAATTGGTGGGTACAACTGTATCTCAGTCTTTGGAGGAATACAAGGGAAAAGTTGGATCAATAATAGAGGAATATTTTGCTACTGATGATGTGGCGGCAGCAGCTGCTGATCTTGCTGATCTTGGTTGTCCAAGCTATCACCATTATTTTGTTAAAAAACTTATCTCCTTGGCAATGGACAGGCATGACCGAGAAAAGGAGATGGCTGCAGTGCTGTTGTCTTCTTTGTACGCCGATGTGATTGAACCTGAGCAGGTTAGCAAAGGTTTTAGCAAATTGCTCGACTCAGCAGATGACTTGGCCCTGGATATCCCTGAAGCAGTAGATATTTTAGCATTATTGGTTGCTCGTGCAGTAGTTGATGACATACTTCCTCCGGCCTTTCTGACGAAAACATCGAAATCTCTACCAGAGGATTCGAAGGGAGTTGAAGTAATTCAGAAGGCTGAGAAAAGCTATTTATCAGCTCCTCTTCATGCAGAAATTATTGAACGTCGATGGGGTGGCAGCACTCACGTCACAGTAGAGGAAGTAAAAAAGAAGATAAGCGACTTACTACATGAGTATGTTGAAAGTGGGGACAAGGCAGAAGCTTGCCGGTGCATAAGAGATCTGAAGGTTCGTTTCTTTCATCATGAAGTTGTAAAGAGGGCTTTAATTTTAGCTATGGAACAAAGAAGTGCAGAGCCACTTATTTTGGCTCTATTGAAAGAAGCTGCTGAGGAGGGTCTTATAACATCTAGTCAGATGTCAAAGGGGTTTGGCAGGCTTGCTGACACTGTAGATGATCTGTCACTTGACATAATTAATGCAAAGGACATGTTTGAATC

Fln Alignment:

Contig1313___KNGRPXXXXXXXXXXXXXXXXXXXXXHVDRNDPNYDSEEEPYQLVGTTVSQSLEEYKGKVGSIIEEYFXXXXXXXXXXXXXXLGCPSYHHYFVKKLISLAMDRHDREKEMAAVLLSSLYADVIEPEQVSKGFSKXXXXXXXXXXXIPEAVDILALLVARAVVDDILPPAFLTKTSKSLPEDSKGVEVIQKAEKSYLSAPLHAEIIERRWGGSTHVTVEEVKKKISDLLHEYVESGDKAEACRCIRDLKVRFFHHEVVKRALILAMEQRSXXXXXXXXXXXXXXXGLITSSQMSKGFGRLADTVDDLSLDIINAKDMFE
A9TEJ7_________________KNGRPKKGGGGGKGTWGKLLSADGDIEVDRNDPNYDSEEEPYQLVGAPVSQSLEEYKEKVVSLIEEYFASGDVLSMATDLSNLGSPNFHHHFVKKLISMAMDHHDKEKEMASVLLSALYADVIQPDQLAKGFTNLLESVDDLILDIPEAVDILAIFLARAVVDDILPPAFLSKTMKVLAEGSQGLAVIQKTEKSYLSAPHHAEVIERKWGGSTHTTVAEVQAKIVALLKEYVESGDNAEACRCIRELNVPFFHHEVVKKALVLAMEEPAAEGKIWSLLKEAAEEGLITSSQMSKGFTRISDSIHDLALDIPQAKEKLE

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
232	20		80		0.995493
236			80	20	0.995493
290	80		20		0.995493
307		85		14	0.993533
337	85		14		0.993533
343		14	85		0.993533
349		14		85	0.993533
353		14		85	0.993533
358		85		14	0.993533
361		85		14	0.993533
367	14		85		0.993533
409		33	66		1.0
417	16	83			0.994512
418	33	16		50	1.0
419	16		83		0.994512
420	83			16	0.994512
424		60		40	1.0
431		40		60	1.0
445	60			40	1.0
455	60		40		1.0
456	20			80	0.995493
457		20		80	0.995493
471			33	66	0.997452
472			66	33	0.997452
633	25		75		0.996473
634	25			75	0.996473
635			75	25	0.996473
637		75		25	0.996473
647			75	25	0.996473
729	16		83		0.994512
730	16		83		0.994512
748	33		66		1.0
771	16			83	0.994512
772		16		83	0.994512
773	20		80		0.995493
775	80			20	0.995493
789	20			80	0.995493
791			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain