SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1296

Length: 488 nt

UniGene Fasta

>biog3_v1.0_unigene1296
AATGTCTGGATCGGTAAGTTTTGCCTGTGTGAAAATCACGGCCATCTGTCCTCTTGCTCTTTTGGAAAGAATCAGCCACTTGCTAAGATGGCAGCACCGCCATCCAACCTTCAGCCTGCCCTGGAAGGCAGAGGCTTTGCCTGTTCTTGCTCCGTCAAGCCCTACTTACCACACATGCTCTGCGCCTGAGCCATTGAGCCCCACCGAGGAAAATGATCTAATTTCAGCGGAGCAAAGGCTATTTCAGCTCTGCCGAGCCTGCGAGGCCATTTCGCTTCCTTTGCTGGTAGATGCAGAATACACAGCCGTTCAGCCTGCCATTGATTACTTTATTTACAGAGCATTTTCCGAATACAACAAAGGCCGCGAGCCTCTGGTGTATGGGACTATACAAGCTTACTTGAAAGACGCTTTGCCTCGTCTAATTGAGGCATCCGAAGCAGCTAAAAAGCAGGGCATTTCAATGGCTCTGAAACTTGTGCGACATT

Ace file of the UniGene biog3_v1.0_unigene1296

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1506	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	proline dehydrogenase [Glycine max]	-	-	48%
FL-Next	sp=Proline dehydrogenase 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	proline dehydrogenase	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	glutamine family amino acid metabolic process	GO:0009064	Biological Process	0.0	67%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proline dehydrogenase	IPR002872	-	0.0	-
Sma3	Proline oxidase	IPR015659	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92983

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 162 - 499

Fln protein: MSGSVSFACVKITAICPLALLERISHLLRWQHRHPTFSLPWKAEALPVLAPSSPTYHTCSAPEPLSPTEENDLISAEQRLFQLCRACEAISLPLLVDAEYTAVQPAIDYFIYRAFSEYNKGREPLVYGTIQAYLKDALPRLIEASEAAKKQGISMALKLVRH

Protein Length: 163

Fln nts: AATGTCTGGATCGGTAAGTTTTGCCTGTGTGAAAATCACGGCCATCTGTCCTCTTGCTCTTTTGGAAAGAATCAGCCACTTGCTAAGATGGCAGCACCGCCATCCAACCTTCAGCCTGCCCTGGAAGGCAGAGGCTTTGCCTGTTCTTGCTCCGTCAAGCCCTACTTACCACACATGCTCTGCGCCTGAGCCATTGAGCCCCACCGAGGAAAATGATCTAATTTCAGCGGAGCAAAGGCTATTTCAGCTCTGCCGAGCCTGCGAGGCCATTTCGCTTCCTTTGCTGGTAGATGCAGAATACACAGCCGTTCAGCCTGCCATTGATTACTTTATTTACAGAGCATTTTCCGAATACAACAAAGGCCGCGAGCCTCTGGTGTATGGGACTATACAAGCTTACTTGAAAGACGCTTTGCCTCGTCTAATTGAGGCATCCGAAGCAGCTAAAAAGCAGGGCATTTCAATGGCTCTGAAACTTGTGCGACATT

Fln Alignment:

Contig1296___SFACVKITAICPLALLERISHLLRWQHRHPTFSLPWKAEALPVLAPSSPTYHTCSAPEPLSPTEENDLISAEQRLFQLCRACEAISLPLLVDAEYTAVQPAIDYFIYRAFSEYNKGRE-PLVYGTIQAYLKDALPRLIEASEAAKKQGISMALKLVR
P92983_________________SSVVVKITAICPISLLKRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPLTAEEERELEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRPIVYNTIQAYLRDAGERLHLAVQNAEKENVPMGFKLVR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
74	33	33	33		0.997753
75	33		33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain