SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1262

Length: 358 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1262
TCAGTTTGTCAACATTTGGGTTTTACGTGAATATTTAGAGTATGATATGAAGATTCCAAACCCTCCAATTGAGATTGATTTTGAGCGGCTTGTGGATGATTTTGTATTCATCTGTTTCTTTGTTGGGAATGATTTCCTTCCGCACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAACTTGCTGATGGTTGTATACAAAAAGGAGTTTGGTGAAATGGGTGGTTATCTGACAGATGCGGGTGAGGTAAATTTGACGAGGGTGGAGCATTTTATTCAGTCTGTAGCTTTTTACGAGGAAAGAATTTTTCAAAAGCGAGCTCGTTTGAAACAGGCGCAGGAAAATGCAGATGACATT

Ace file of the UniGene biog3_v1.0_unigene1262 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene216	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'-3' exoribonuclease 2 n=2 Tax=Arabidopsis thaliana RepID=XRN2_ARATH	-	-	0.0	53%
FL-Next	sp=5'-3' exoribonuclease 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR013084	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ04

Fln msg: Distance to subject end: 530 aas, your sequence is shorter than subject: 119 - 947

Fln protein: QFVNIWVLREYLEYDMKIPNPPIEIDFERLVDDFVFICFFVGNDFLPHMPTLEIREGAINLLMVVYKKEFGEMGGYLTDAGEVNLTRVEHFIQSVAFYEERIFQKRARLKQAQENADDI

Protein Length: 120

Fln nts: TCAGTTTGTCAACATTTGGGTTTTACGTGAATATTTAGAGTATGATATGAAGATTCCAAACCCTCCAATTGAGATTGATTTTGAGCGGCTTGTGGATGATTTTGTATTCATCTGTTTCTTTGTTGGGAATGATTTCCTTCCGCACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAACTTGCTGATGGTTGTATACAAAAAGGAGTTTGGTGAAATGGGTGGTTATCTGACAGATGCGGGTGAGGTAAATTTGACGAGGGTGGAGCATTTTATTCAGTCTGTAGCTTTTTACGAGGAAAGAATTTTTCAAAAGCGAGCTCGTTTGAAACAGGCGCAGGAAAATGCAGATGACATT

Fln Alignment:

Contig1262___QFVNIWVLREYLEYDMKIPNPPIEIDFERLVDDFVFICFFVGNDFLPHMPTLEIREGAINLLMVVYKKEFGEMGGYLTDAGEVNLTRVEHFIQSVAFYEERIFQKRARLKQAQENADDI
Q9FQ04_________________QFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
217		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain