SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1247

Length: 422 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1247
CGGGCATTTGGAGGCGGGAGAATGAGAACGAGAATTCCGACTCCACTGTCAGATTGATGCGAGACCAACTGATCATGGCTAGGGTGTATTCAAGCATTTCCCAGGCTAGGAATAATCTTGATTTATACCAGGAATTGATGCTTCGTATTAAAGAATGTCAGCGTAACATTGGGCGAGGCTAATGCAGATTCTGATCTACCTCAAAGTGCACCTGAGAAGATCAAGGCTATGGGTCATGTCCTATCCAAGGCTAGAGAACTAATTTTATGACTGTGCGACAGTAACAAAGAAGTTGCGAGCCATGCTTCAGTCTGCAGACGAGCAAGTAAGAACCTTGAAAAAGCAAAGTACATTTTTAAGTCAGCTGGCAGCAAAGCTGTTCCCAAGGGCCTGCACTGTCTGTCCATGCGATTGACCATAGA

Ace file of the UniGene biog3_v1.0_unigene1247 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27801	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyl transferase family 8 protein-like n=2 Tax=Oryza sativa RepID=Q652K2_ORYSJ	-	-	83%
FL-Next	sp=Alpha-1,4-galacturonosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	alpha- -galacturonosyltransferase 1-like	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	91%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	91%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Proliferating cell nuclear antigen, PCNA	IPR000730	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LE59

Fln msg: Separated hits, possible frame ERROR between 173 and 266, Unexpected STOP codon at 3' end. Distance to subject end: 332 aas, your sequence is shorter than subject: 138 - 673

Fln protein: GIWRRENENENSDSTVRLMRDQLIMARVYSSISQARNNLDLYQELMLRIKECQRNIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYDCATVTKKLRAMLQSADEQVRTLKKQSTFLSQLAAKLFPRACTVCPCD*

Protein Length: 139

Fln nts: CGGGCATTTGGAGGCGGGAGAATGAGAACGAGAATTCCGACTCCACTGTCAGATTGATGCGAGACCAACTGATCATGGCTAGGGTGTATTCAAGCATTTCCCAGGCTAGGAATAATCTTGATTTATACCAGGAATTGATGCTTCGTATTAAAGAATGTCAGCGTAACATTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTATGACTGTGCGACAGTAACAAAGAAGTTGCGAGCCATGCTTCAGTCTGCAGACGAGCAAGTAAGAACCTTGAAAAAGCAAAGTACATTTTTAAGTCAGCTGGCAGCAAAGCTGTTCCCAAGGGCCTGCACTGTCTGTCCATGCGATTGACCATAGA

Fln Alignment:

Contig1247___IWRRENENENSDSTVRLMRDQLIMARVYSSISQARNNLDLYQELMLRIKECQRNIGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYDCATVTKKLRAMLQSADEQVRTLKKQSTFLSQLAAKLFP
Q9LE59_________________IWRRENENDNSDSNIRLMRDQVIMARVYSGIAKLKNKNDLLQELQARLKDSQRVLGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLAQLAAKTIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain