SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1201

Length: 426 nt

UniGene Fasta

>biog3_v1.0_unigene1201
AATGTGAATTGCTGACTGGAAGGAAGGCCATTGACACAGAACGCCCTGGGATTGAGAACTTGGTCCTTTGGGCAAGGCCGTTACTGTACAGGGGAAATGCAGAGGAGCTGGTGGACCCTCAACTGAGATCGTCCTGCAAGGGAAAGCAGGTAACGAGAATGATGGGGGCAGCGGCTGTGTGCCTCCACCCAATGGAGTCATTGAGGCCATGCATGAGCCACATTCTCAAAATCCTGAATGGCGAAGAAGACACGAGACTCATACAGCATGCTCGCCTCACACTGCTTGACGACGTCAATGGAGAATCTGAGAAGAACATGAAGGCGCGCCAGGGCCATCTCGCCCTAGCCATGGTCGGAATGGATTTGGATTTAGAGTTTGTCGATAATAATAACGACGAAGACAATAATAATTCATGCCAACATT

Ace file of the UniGene biog3_v1.0_unigene1201

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene133	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAM60944.1\| protein kinase-like protein [Arabidopsis thaliana] gb\|AED94233.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	kinase family protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	69%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	69%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD14

Fln msg: STOP codon was not found. Distance to subject end: 12 aas,

Fln protein: CELLTGRKAIDTERPGIENLVLWARPLLYRGNAEELVDPQLRSSCKGKQVTRMMGAAAVCLHPMESLRPCMSHILKILNGEEDTRLIQHARLTLLDDVNGESEKNMKARQGHLALAMVGMDLDLEFVDNNNDEDNNNSCQH

Protein Length: 142

Fln nts: AATGTGAATTGCTGACTGGAAGGAAGGCCATTGACACAGAACGCCCTGGGATTGAGAACTTGGTCCTTTGGGCAAGGCCGTTACTGTACAGGGGAAATGCAGAGGAGCTGGTGGACCCTCAACTGAGATCGTCCTGCAAGGGAAAGCAGGTAACGAGAATGATGGGGGCAGCGGCTGTGTGCCTCCACCCAATGGAGTCATTGAGGCCATGCATGAGCCACATTCTCAAAATCCTGAATGGCGAAGAAGACACGAGACTCATACAGCATGCTCGCCTCACACTGCTTGACGACGTCAATGGAGAATCTGAGAAGAACATGAAGGCGCGCCAGGGCCATCTCGCCCTAGCCATGGTCGGAATGGATTTGGATTTAGAGTTTGTCGATAATAATAACGACGAAGACAATAATAATTCATGCCAACATT

Fln Alignment:

Contig1201___ELLTGRKAIDTERPGIENLVLWARPLLYRGNAEELVDPQLRSSCKGKQVTRMMGAAAVCLHPMESLRPCMSHILKILNGEED
D5AD14_________________ELITGRQPIDSSQ---QSLVIWAKPFIDSRNIGGLADPCLGDKYNVHEMSCVIFTAALCVQQSAHLRPCMGHVLQLLTSEEE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
250			75	25	0.996473
251	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain