SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1186

Length: 248 nt

UniGene Fasta

>biog3_v1.0_unigene1186
AATGTAGAAGAGCAAGAACTGGTAACTCGAGGTGGGTTTGTGACCAAAAACTGAAAATGAGAATGGTGGGGATCAATCTCATGGCACTGGGCTTATGGGCGATCTTCACACTGGTTCTCATGTCGGGTGCAGGGGTTGAAGCTTACGAGAATTACACAGTCGGAGACAAGCTGGGATGGTACGACGATATCATGAAGCCCACTGTCAATTATGCCAAGTGGGCTGCTGGCAAGAATTTCAGCCTGGGA

Ace file of the UniGene biog3_v1.0_unigene1186

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15717	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cu_bind_like domain containing protein	-	-	3.0e-13	29%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%
Blast2go	copper ion binding	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastocyanin-like	IPR003245	-	0.0	-
Sma3	Cupredoxin	IPR008972	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7T1B2

Fln msg: Distance to subject end: 169 aas, your sequence is shorter than subject: 64 - 228

Fln protein: MRMVGINLMALGLWAIFTLVLMSGAGVEAYENYTVGDKLGWYDDIMKPTVNYAKWAAGKNFSLG

Protein Length: 65

Fln nts: AATGTAGAAGAGCAAGAACTGGTAACTCGAGGTGGGTTTGTGACCAAAAACTGAAA_-_ATGAGAATGGTGGGGATCAATCTCATGGCACTGGGCTTATGGGCGATCTTCACACTGGTTCTCATGTCGGGTGCAGGGGTTGAAGCTTACGAGAATTACACAGTCGGAGACAAGCTGGGATGGTACGACGATATCATGAAGCCCACTGTCAATTATGCCAAGTGGGCTGCTGGCAAGAATTTCAGCCTGGGA

Fln Alignment:

Contig1186___IFTLVLMSGAG-VEAYENYTVGDKLGWYDDIMKPTVNYAKWAAGKNFSLG
D7T1B2_________________LLLLVFVSFSGYVEAYKNYTVGDSLGWYDNLHEPSVNYQKWVAGKNFSLG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain