SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1181

Length: 546 nt

UniGene Fasta

>biog3_v1.0_unigene1181
AATGTAACGTTAGAGTGTAAAAATGCTCGAGCAATTGCTCATCTTCACCAGAGGCGGATTAATTCTCTGGACATGTCGAGAGCTTGGAAATGCTCTTAAAGGTTCGCCTATTGATGCTCTTATTCGATCCTGTCTTTTGGAGGAAAGATCTGGTGATGCAGCTTATCAATATGATGGCCCAGGGGGTTCATATACTCTGAAGTGGACATTTCACAATGAGTTAGGTCTTGTTTTTGTGGCTGTTTATCAGCGGATGTTGCATCTGTTGTATGTGGATGAGCTATTAGACAAGGTAAAGCATGAATTTGCAGAAATTTATAATCCAAAGCGGACGGTTTACACGGATTTTGATGATACCTTTAGGCAGCTGTTAAAGGAGTCTGAGGCTCGAGCTGAAGAACTGAAGAAAATGAAGCAGCAGAATAAACTCCCTGAGGTTTCAACAAATAGACAGGGACAAACTACAAATCAAAAAGATCGATCTCAGGCGAAGGGAGGAAAAATTCCAGTAAAGCTGAGAGCAAAAGTGGTGCAGATGATGACATT

Ace file of the UniGene biog3_v1.0_unigene1181

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8161	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	signal recognition particle receptor subunit alpha [Arabidopsis thaliana] emb\|CAB79778.1\| signal recognition particle receptor-like protein [Arabidopsis thaliana] gb\|AAL57699.1\| AT4g30600/F17I23_60 [Arabidopsis thaliana] gb\|AAM91442.1\| AT4g30600/F17I23_60	-	-	65%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	81%
Blast2go	signal recognition particle receptor subunit alpha	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	77%
Blast2go	SRP-dependent cotranslational protein targeting to membrane	GO:0006614	Biological Process	77%
Blast2go	receptor activity	GO:0004872	Molecular Function	77%
Blast2go	GTPase activity	GO:0003924	Molecular Function	77%
Blast2go	GTP binding	GO:0005525	Molecular Function	77%
Blast2go	signal recognition particle binding	GO:0005047	Molecular Function	77%
Blast2go	signal recognition particle, endoplasmic reticulum targeting	GO:0005786	Cellular Component	77%
Blast2go	signal recognition particle receptor complex	GO:0005785	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Signal recognition particle receptor, alpha subunit, N-terminal	IPR007222	-	-
Sma3	Signal recognition particle, SRP54 subunit, helical bundle	IPR013822	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9HB30

Fln msg: Distance to subject end: 449 aas, your sequence is shorter than subject: 174 - 624

Fln protein: MLEQLLIFTRGGLILWTCRELGNALKGSPIDALIRSCLLEERSGDAAYQYDGPGGSYTLKWTFHNELGLVFVAVYQRMLHLLYVDELLDKVKHEFAEIYNPKRTVYTDFDDTFRQLLKESEARAEELKKMKQQNKLPEVSTNRQGQTTNQKDRSQAKGGKIPVKLRAKVVQMMT

Protein Length: 175

Fln nts: AATGTAACGTTAGAGTGTAAAA_-_ATGCTCGAGCAATTGCTCATCTTCACCAGAGGCGGATTAATTCTCTGGACATGTCGAGAGCTTGGAAATGCTCTTAAAGGTTCGCCTATTGATGCTCTTATTCGATCCTGTCTTTTGGAGGAAAGATCTGGTGATGCAGCTTATCAATATGATGGCCCAGGGGGTTCATATACTCTGAAGTGGACATTTCACAATGAGTTAGGTCTTGTTTTTGTGGCTGTTTATCAGCGGATGTTGCATCTGTTGTATGTGGATGAGCTATTAGACAAGGTAAAGCATGAATTTGCAGAAATTTATAATCCAAAGCGGACGGTTTACACGGATTTTGATGATACCTTTAGGCAGCTGTTAAAGGAGTCTGAGGCTCGAGCTGAAGAACTGAAGAAAATGAAGCAGCAGAATAAACTCCCTGAGGTTTCAACAAATAGACAGGGACAAACTACAAATCAAAAAGATCGATCTCAGGCGAAGGGAGGAAAAATTCCAGTAAAGCTGAGAGCAAAAGTGGTGCAGATGATGACATT

Fln Alignment:

Contig1181___MLEQLLIFTRGGLILWTCRELGNALKGSPIDALIRSCLLEERSGDAAYQYDGPGGSYTLKWTFHNELGLVFVAVYQRMLHLLYVDELLDKVKHEFAEIYNPKRTVYTDFDDTFRQLLKESEARAEELKKMKQQNK
B9HB30_________________MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGTASYNYDAPGASYTLKWTFHNDLGLVFVAVYQRILHLLYVDELLAMVKHEFSQIYDPKRVEYFDFDETFRQLRKEAEARAEELRKVKPVGK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
29	33		66		0.997452
33		66		33	0.997452
404	16			83	0.994512
405		16	83		0.994512
407	83			16	0.994512
408			83	16	0.994512
482	25		75		0.996473
483	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain