SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1173

Length: 1664 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1173 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6408	43/47
SustainPine v2.0	sp_v2.0_unigene21484	4/47

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	rna binding	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	76%
Blast2go	positive regulation of salicylic acid mediated signaling pathway	GO:0080151	Biological Process	76%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015903	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE17

Fln msg: your sequence is longer than subject: 271 - 101

Fln protein: MEGSSLPLVVKWADTEKERQARRAQKSQSQPPNTPNADSGQQPSLFGAMPMGYMPPSSYNGYGYQAPGTYGLMQYPLPTLPNQPALHNMVAAINPANTLPGAAPNIVTGMTHANFAAMPSAGYMNSGYPTMSGVQYPMGYQGAVMGPATLPVGHGSVGPAMVNANSTAGNVKTSSGAQVEGPPGANLFIYHIPQEFGDQELSNAFSSFGKVISAKVFVDKATGVSKCFGFVSYDNAAAAQAAINVMNGFQLSGKKLKVQHKRDNKQSKPY*

Protein Length: 272

Fln nts: GTCCGTGAAACTGTTCGTGGGTCAGGTGCCCAAGCACATGACAGAGTCCCAGCTGGTCTCGTTATTTGAGGAAGTAGGTATAGGAAACATTCAGGAAGTCAACATTATCAAAGACAAGCTCACCAAAGCCTCCAGAGGATGTTGCTTTATAACATGCCCAGCAAGACAAGAAGCAGACAAGGCCATCACTTTATTTCACAATAAGCGAACTCTACCAGGGGCATCCAGTCCAATGCAAGTCAAATATGCAGATGGTGAATTGGAAAGAATAGAGCATAAACTTTTTATTGGGATGCTTCCAAAGACTGTTACAGATGCTGAAGTGACTGCAGTTTTTGCCAACTATGGGACAATAAAAGAATTGCAAATTTTGCGAGGATCTCAGCAAAACAAGTAAAGCTGGATGTGCTTTTTTGAAGTACGAGACAAGGGATCAAGCTGTGGCTGCTCTCGAAGCTGTAAATGGAAAACACAAA_-_ATGGAGGGTTCAAGTCTACCATTGGTTGTAAAATGGGCAGATACTGAAAAGGAGAGACAAGCACGAAGGGCTCAAAAATCTCAGTCACAACCTCCTAACACACCTAACGCGGACTCTGGACAACAACCTTCTTTGTTTGGCGCAATGCCAATGGGATATATGCCACCTTCTTCATACAATGGCTATGGATACCAGGCTCCTGGGACATATGGGCTAATGCAATATCCTTTGCCTACTTTGCCAAATCAGCCTGCTTTACATAATATGGTGGCTGCTATCAATCCAGCTAACACTTTGCCTGGTGCTGCCCCCAATATTGTCACTGGTATGACACATGCTAACTTTGCTGCAATGCCATCAGCAGGATACATGAATTCAGGATACCCTACTATGTCTGGTGTTCAGTACCCTATGGGATATCAAGGGGCAGTGATGGGTCCTGCCACACTGCCTGTTGGACATGGTTCTGTTGGACCAGCGATGGTAAATGCAAACTCAACAGCTGGAAATGTGAAAACAAGCTCTGGGGCACAGGTTGAGGGCCCACCTGGAGCAAATTTATTCATTTATCACATTCCGCAAGAGTTTGGTGATCAGGAACTATCTAATGCTTTTTCATCCTTTGGAAAAGTCATAAGTGCAAAGGTTTTTGTTGACAAGGCTACTGGTGTCAGCAAATGCTTTGGATTTGTCAGTTATGACAATGCTGCAGCTGCACAAGCTGCTATTAATGTGATGAATGGGTTTCAGTTAAGTGGAAAGAAGCTGAAAGTCCAACATAAGCGAGACAACAAACAAAGCAAGCCTTATTGA___ACTTATATTAATCAACATACGAAGAGGAGGTTGAGGATGCTGTTAATTTTCAAACTATGACTGTTGCATTTAAGGATGTGACAGTTTTGTGCACCATTTATCTTCAGGGTTAAAATGGCATGATGTATGATATTGGAGGGGGAAATGGAAGATTGTGCATGCATATATATGTGGCTCCAAAGCCATCATGTGACAAAGGAGAGGGGATGGGTCACTTCGGACGGTTTTGGTTCTTTAACATTGCGATTAATTTCTAGTGTGGTATGGTTCTCATAAAGTGACCTCAGGTAAGAAGAGACAGGTTAGCAAATACCGAATGAATGTGCATGATTTATGGTTGGGAACTCGATGGTTAGAGATATATTACATGCTGAT

Fln Alignment:

Contig1173___MGYQGAVMGPATLPVGHGSVGPAMVNANSTAGNVKTSSGAQVEGPPGANLFIYHIPQEFGDQELSNAFSSFGKVISAKVFVDKATGVSKCFG
D5AE17_________________MGYQGAMMGPAALPVGHGSVGPAMVNANSAAGNVKTSSGAQVEGPPGANLFIYHIPQEFGDQELSNAFSSFGKVISAKVFVDKATGVSKCFG

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
861	33			66	0.997452
862	66			33	0.997452
863		66	33		0.997452
864		66		33	0.997452
1015	11			88	0.923564
1016		11	88		0.923564
1018	88			11	0.923564
1019			88	11	0.923564
1035	11	88			0.923564
1161	18	81			0.999994
1162	81			18	0.999994
1163	81		18		0.999994
1164		81		18	0.999994
1193	12			87	0.992554
1194		12	87		0.992554
1195	12			87	0.992554
1279	16		16	33	1.0
1280		33	66		1.0
1281	16	66			0.988813
1283			83	16	0.994512
1346	16	83			0.994512
1349		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain