SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1154

Length: 447 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1154
AAATTTGCAGCAGAGTCATGCAGCAGTCGTATGTAGTACTGGCCCTGTGGTGGATATTGTTACTGCGTCACCCGCTCTGGGGAGTTTTTCGCTAATACAGAAGGATGGAACAGCATGCCAAACAGGAAAAACTGCTTCCTTCTCGTCTCAAATGCAAGTTCATGGGACCATTCAGAGGCAGTCTGTCAGACCCACAGTGGTCATCTTGCTGCATTGACATCCATGCAAGAGCTAAAATATGTGCAAGCTCTTTGCAGAAACATCAGTGATGGTTGCTGGGTTGGAGGGCGCGGTGTTAACTCTCAAAAAGGTTTTAGTTGGCAGTGGAGTGATCATCGAACCCTTTGGAATAACTCTGTTTTTCCTGGGGCACCATCTCCCCTCAACTGTTCAAATTCATCATGCCTCAGCACCAATCTGACTGACTTTTGCACTTTAGTGACCAAT

Ace file of the UniGene biog3_v1.0_unigene1154 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2873	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9S040_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	78%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Sushi/SCR/CCP	IPR000436	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	C-type lectin	IPR001304	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	C-type lectin-like	IPR016186	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A860

Fln msg: Distance to subject end: 402 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 111 - 550

Fln protein: MPNRKNCFLLVSNASSWDHSEAVCQTHSGHLAALTSMQELKYVQALCRNISDGCWVGGRGVNSQKGFSWQWSDHRTLWNNSVFPGAPSPLNCSNSSCLSTNLTDFCTLVTN

Protein Length: 112

Fln nts: AAATTTGCAGCAGAGTCATGCAGCAGTCGTATGTAGTACTGGCCCTGTGGTGGATATTGTTACTGCGTCACCCGCTCTGGGGAGTTTTTCGCTAATACAGAAGGATGGAACAGC_-_ATGCCAAACAGGAAAAACTGCTTCCTTCTCGTCTCAAATGCAAGTTCATGGGACCATTCAGAGGCAGTCTGTCAGACCCACAGTGGTCATCTTGCTGCATTGACATCCATGCAAGAGCTAAAATATGTGCAAGCTCTTTGCAGAAACATCAGTGATGGTTGCTGGGTTGGAGGGCGCGGTGTTAACTCTCAAAAAGGTTTTAGTTGGCAGTGGAGTGATCATCGAACCCTTTGGAATAACTCTGTTTTTCCTGGGGCACCATCTCCCCTCAACTGTTCAAATTCATCATGCCTCAGCACCAATCTGACTGACTTTTGCACTTTAGTGACCAAT

Fln Alignment:

Contig1154___GWNSMPNRKNCFLLVSNASSWDHSEAVCQTHSGHLAALTSMQELKYVQALCRNISDGCWVGGRGVNSQKGFSWQWSDHRTLWNNSVFPGAXXXXXXXXXXXXXXXXTDFCTLVTN
D5A860_________________GWNSAPNRKNCFLLVSNASSWNHSEAVCQNHSGHLAALTSVQELKYVQAFCRNISNGCWVGGRGVNSQKGFSWEWSDHRTLWNNSVFPGAPSPLNCSNSSCLNTNLTDFCTLVTN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
201	33	66			0.997452
202	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain