SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1112

Length: 1232 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1112

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10747	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	vesicle-associated membrane protein-associated protein [Triticum aestivum]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	vesicle-associated membrane	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Ribosomal protein L19	IPR001857	-	-
Sma3		IPR003612	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Vesicle-associated membrane protein	IPR016763	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABZ6

Fln msg:

Fln protein: MTNKDLLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEDGKVVEECKLRVVYAPPPQPPSPVPEGSEEGLSPRASDSGKQNTGLFEAAPKELGELKAKLTEARTMLSKLTDERNTVVNQTQQLRQELESIRRGTQNAHSHFSILFCLIVGFLGILVGYLVSA*

Protein Length: 237

Fln nts: CAGGTCTTTTCTGGTTACCTCAATCGCCGCTTGGAAGTGTTGATCTGTTCGTGAAATGGGGCTTTGCAAAAGCTGATCTAAAGAGGTTGTTTTGAGGGTTGCGTTTGGCCTGGGAATTTGTACCGGGGTTCACGTTCAAGTTCAGGGTAAAGA_-_ATGACTAACAAGGATCTTCTGACGATTCATCCGACTGAACTTAAATTCCCGTTCGAACTGAAGAAGCAGAGTTCATGTTCTCTTCAGTTGGTAAATAACTCAGATCATTATGTGGCCTTCAAGGTGAAAACTACATCCCCAAAGAAGTATTGTGTACGACCCAACACTGGAGTTGTCCTGCCTAAGTCTACCTGTGATGTTATAGTCACCATGCAATCACAGCGAGAAGCCCCTCCTGATCTGCAGTGCAAAGACAAATTTCTTGTGCAGAGCGTTGTAGCACCTTATGGGGTAGATCAGAAGGATATCACTCAGGAAATGTTCAATAAGGAGGATGGGAAGGTTGTTGAGGAGTGCAAGCTCAGGGTGGTTTATGCTCCTCCACCCCAACCTCCTTCTCCAGTTCCTGAAGGATCAGAAGAGGGCCTATCTCCAAGGGCATCTGACAGTGGAAAACAGAATACTGGCTTGTTTGAAGCGGCGCCCAAAGAACTTGGTGAATTGAAGGCAAAACTTACTGAGGCACGGACAATGCTGTCAAAATTAACAGATGAAAGGAACACAGTTGTGAACCAAACTCAACAACTACGTCAGGAATTGGAATCAATTCGCCGAGGAACTCAAAACGCACATTCTCACTTTTCCATCCTGTTTTGTTTGATTGTTGGTTTTCTAGGTATTCTAGTTGGTTACCTTGTTAGTGCATAG___ATTTGATGTAACCATTTCCGTCACTGTTAGAAAGATAAAGTGTTTGGGGTGCAAAGGTTTTGTTCGAAAGTTTTTCTAAAAGCATGAAGCATATTTGGTGACCTTTGCGTTAGGTATTTGCTGCTTGAATACGTAATTTTTGTTATGAATGCTATTGTTGAGCTCCAGCATATTAAGAGAGAAGCTCAGACATTGTCAAAGTGAAGTTGCAATACGGTTGGGTAGTTGTGCAGTCTAAACACCTGCCTGGTAAGGTTTTGACTGGTGTACAATTCTATGGATTGAGTATAGCATAGAGAGTGTGCTAAGAATGAAATCATGAATGCTTTCTAGAACACAGCAAAGCTCGATTCTGTTCGTGAAGCCACATT

Fln Alignment:

Contig1112___MTNKDLLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEDGKVVEECKLRVVYAXXXXXXXXXXXXXXXXXXXRA--SDSGKQNTGLFEAAPKELGELKAKLTEARTMLSKLTDERNTVVNQTQQLRQELESIRRGTQNAHSHFSILFCLIVGFLGILVGYLVS
D5ABZ6_________________MSNRELLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEEGKVIEECKLRVVYAPPPQPPSPVPEGSEEGLSPRALPSDSGKQNTGLFEVAPKELGELKAKLTEARTMLSKLTDERNTVVQQTQQLRQELESMRQGAQNTQSRFSILFCLIVGFLGILVGYLVN

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
745	20	80			0.995493
748			80	20	0.995493
764	12		87		0.992554
765		87		12	0.992554
766		87		12	0.992554
778	85	14			0.993533
780		85		14	0.993533
781			85	14	0.993533
912	16		83		0.994512
915	83			16	0.994512
916	83			16	0.994512
925	25			75	0.996473
929	75			25	0.996473
930	75			25	0.996473
933		33		66	0.997452
934	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain