SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1054

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1054
AGAGAGCAAAGATCCCTGATCCTGATGCGAAAAGTGAGGCAAAATGGTGATCTTGAGGTTTGGGCTGGTCCACTTTCAAACAACCGTATTGTTATAGTTTTATGGAACAGAAGTTCATCAAGAGCAATGATCAAAGCACATTGGAAAGACATTGGACTTCACTCTTCTATTTCTGCCAAAGTCAGGAACTTATGGAAGCACAGAACTCTGGCAACTAATCATACAGGCAGCCTTACAACATCAGTGAAGCCTCATGCATGCAAAATGTATGTTTTGACAGTTAGCCCCTACAGTCACACCTCTCCATTGGACTGGATTTATGATACTTTTGGGATACCATTACGTGCTAAGAGGCATTAAGAAAATCGATTCCCCTCAAGGAAGATCCAGGGCATTTTTAAGGGTGACGTTTAAGAGAAAATCATGAATGAGTGGCACTTAACAAGTTGTTGAAACATCCACATACATTTTTGTCCTCCAATGTCGAAGACAATAGGAACTATACATT

Ace file of the UniGene biog3_v1.0_unigene1054 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7243	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-galactosidase [Helianthus annuus]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	alpha-galactosidase alpha-n-	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-galactosidase.	EC:3.2.1.22	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	78%
Blast2go	Glycerolipid metabolism	00561	78%
Blast2go	Sphingolipid metabolism	00600	78%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	78%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	78%
Blast2go	cation binding	GO:0043169	Molecular Function	78%
Blast2go	alpha-galactosidase activity	GO:0004557	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWJ8

Fln msg: your sequence is shorter than subject: 120 - 399

Fln protein: REQRSLILMRKVRQNGDLEVWAGPLSNNRIVIVLWNRSSSRAMIKAHWKDIGLHSSISAKVRNLWKHRTLATNHTGSLTTSVKPHACKMYVLTVSPYSHTSPLDWIYDTFGIPLRAKRH*

Protein Length: 121

Fln nts: AGAGAGCAAAGATCCCTGATCCTGATGCGAAAAGTGAGGCAAAATGGTGATCTTGAGGTTTGGGCTGGTCCACTTTCAAACAACCGTATTGTTATAGTTTTATGGAACAGAAGTTCATCAAGAGCAATGATCAAAGCACATTGGAAAGACATTGGACTTCACTCTTCTATTTCTGCCAAAGTCAGGAACTTATGGAAGCACAGAACTCTGGCAACTAATCATACAGGCAGCCTTACAACATCAGTGAAGCCTCATGCATGCAAAATGTATGTTTTGACAGTTAGCCCCTACAGTCACACCTCTCCATTGGACTGGATTTATGATACTTTTGGGATACCATTACGTGCTAAGAGGCATTAA___GAAAATCGATTCCCCTCAAGGAAGATCCAGGGCATTTTTAAGGGTGACGTTTAAGAGAAAATCATGAATGAGTGGCACTTAACAAGTTGTTGAAACATCCACATACATTTTTGTCCTCCAATGTCGAAGACAATAGGAACTATACATT

Fln Alignment:

Contig1054___RKVRQNGDLEVWAGPLSNNRIVIVLWNRSSSRAMIKAHWKDIGLHSSISAKVRNLWKHRTLATNHTGSLTTSVKPHACKMYVLT
A9NWJ8_________________KKVNKLGDLEVWAGPLSNNRVAVVLLNRSNSRTIITAKWEDIGLNPSAVVRVRNLWRHRELEANHQGSLTASVKPHGCKMYVLT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
402	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain