SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene992

Length: 987 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene992 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8848	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	GATA transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RQG2_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	protein	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	0.0	56%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	56%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	Transcription factor, GATA, plant	IPR016679	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKB3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 303 - 321

Fln protein: M*KSFRAYNVLETDANNNGHLCVPCDDLAELEWLSNFVEDSFSTEQAPKPIFPPNFGDVITDKEEEKPHIANPIRSTSPLSGLDTSSSSWKTPSFSPETPVPGRARSKRSRAPACNWSSRIVSPASSASALENGPTSSVLSSDSEFFAESYFPAKKPAKMSQGNKKREQDQQTQIRKCMHCDTTKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVVSKHSNSHRKVIEMRRQKEMQDALQQASKLYPNDKEGNEDGDEYEEDEDGSDGQYPHFGSDDDTYLVHTNQDYRHFI*

Protein Length: 304

Fln nts: AATGTAAAAGAGCTTCAGAGCGTACAATGTTCTGGAAACTGATGCAAACAATAATGGTCATCTCTGTGTTCCGTGCGATGATCTGGCGGAGCTAGAATGGCTTTCCAATTTCGTGGAGGACTCATTTTCAACCGAACAAGCGCCCAAGCCAATCTTTCCTCCGAACTTTGGAGATGTCATTACAGACAAAGAAGAAGAGAAGCCCCATATAGCAAACCCAATTCGGAGCACCAGTCCATTGTCTGGCTTGGACACTAGCTCTAGCTCCTGGAAAACCCCAAGCTTCAGTCCAGAAACTCCAGTGCCAGGGCGTGCACGAAGCAAAAGGTCAAGAGCCCCTGCTTGTAACTGGTCTTCCCGCATAGTCTCACCTGCTTCATCAGCCAGTGCATTAGAGAATGGACCCACTTCTTCTGTGCTATCTTCAGATTCAGAATTCTTTGCAGAATCCTACTTCCCTGCAAAGAAACCTGCCAAGATGAGCCAAGGAAACAAGAAGAGAGAGCAAGACCAGCAGACTCAAATCAGGAAATGTATGCACTGTGACACAACAAAGACACCTCAATGGAGAACAGGCCCCATGGGACCCAAAACATTGTGCAATGCATGTGGTGTGAGGTACAAATCAGGCAGGCTTGTGCCTGAATACAGGCCTGCTGCAAGTCCAACATTTGTGGTCTCGAAACACTCTAATTCTCACAGAAAGGTCATTGAGATGAGAAGGCAGAAGGAAATGCAGGACGCCCTACAGCAGGCCTCCAAACTGTACCCAAATGACAAGGAAGGGAATGAAGATGGGGATGAATATGAGGAGGATGAGGATGGATCAGATGGTCAATACCCTCATTTTGGCTCGGATGATGATACTTACTTAGTCCATACAAATCAGGATTACAGGCATTTCATATGA___TGCAACAATTCAACAGCAAATTCCCTACCATCTGTACAATTTTTAATACTAACAAAGCAGCAGGGAGGGAGGCAAGC

Fln Alignment:

Contig992___AYNVLETDANN-----NGHLCVPCDDLAELEWLSNFVEDSFSTEQAPKPIFPPNFGDVITDKEEEKPHIANPIRXXXXXXXXXXXXXXXXXXXXXPETPVPGRARSKRSRAPACNWXXXXXXXXXXXXALENGPTSSVLSSDSEFFAESYFPAKKPAKMSQGNKKREQDQQTQIRKCMHCDTTKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVVSKHSNSHRKVIEMRRQK-EMQDALQQ
B8LKB3________________APNVVEVDGSGGVCLFSGELCVPADALEELEWLSTFVDDSFVA--VPELVVPVDSVREPSEREESQRKQSNAL------------------LAGAGRTWVLGRARSKRSR---CVNPAVFVSVALKNDEPRTGRKAAMKGSVCVAPPAAVKKAKKGCQSRSGGGQES-------RRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPALSPTFSSGLHSNCHRRVVEIRRQRIDQQQPLSQ

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
159	25			75	0.996473
160		25	75		0.996473
163		75		25	0.996473
169	33			66	0.997452
173		66		33	0.997452
299	25		75		0.996473
300	75			25	0.996473
332	25		75		0.996473
335			75	25	0.996473
336			75	25	0.996473
808	33			66	0.997452
809	33	66			0.997452
812	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain