SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene989

Length: 457 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene989
GCTATGTGGACGAGGCTACTTGTTTCTAGCATTCTCTGCAAATCAATTGAGAGACCGTTCTGCATGGTTCTTTGCTGAAGGGAAGGATATTACAGTACGACATATCAAGCACTGGATGGGGAACTTCCCCCAAGGCAATGTTGCCAAGCATGCTGCAAGGATGGGCCAATGCTTTTCTTCCACCTATTGTACAGTGGAGGTTCCACCAAAAGACATTGAGCACCTTCCAGATATTAAAAGGAATGGTTACGAATTTTCTGATGGTATAGGAAAAATTACACCAGATCTTGCCAGGGAAGTTGTTCAAGCACTGCAGTTGAATTTCAACCCTCCCTCAGCGTTTCAGATCAGGTATGGTGGATACAAGGGCGTGGTTGCAACTTGGGCAGCAGAACCAGGAAGTAAATTTAAGCTCTCATTGAGACCCAGTATGAAGAAGTTTGAGTCTGAACACACA

Ace file of the UniGene biog3_v1.0_unigene989 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5016	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]	-	-	61%
FL-Next	sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice).	-	-	63%
Blast2go	rna-dependent rna polymerase 6	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed RNA polymerase.	EC:2.7.7.48	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	73%
Blast2go	Metabolic pathways	01100		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	carpel development	GO:0048440	Biological Process	73%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	73%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	73%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	73%
Blast2go	leaf development	GO:0048366	Biological Process	73%
Blast2go	recognition of pollen	GO:0048544	Biological Process	73%
Blast2go	RNA-directed RNA polymerase activity	GO:0003968	Molecular Function	73%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LHH9

Fln msg: Distance to subject end: 543 aas, your sequence is shorter than subject: 152 - 1218

Fln protein: LCGRGYLFLAFSANQLRDRSAWFFAEGKDITVRHIKHWMGNFPQGNVAKHAARMGQCFSSTYCTVEVPPKDIEHLPDIKRNGYEFSDGIGKITPDLAREVVQALQLNFNPPSAFQIRYGGYKGVVATWAAEPGSKFKLSLRPSMKKFESEHT

Protein Length: 153

Fln nts: GCTATGTGGACGAGGCTACTTGTTTCTAGCATTCTCTGCAAATCAATTGAGAGACCGTTCTGCATGGTTCTTTGCTGAAGGGAAGGATATTACAGTACGACATATCAAGCACTGGATGGGGAACTTCCCCCAAGGCAATGTTGCCAAGCATGCTGCAAGGATGGGCCAATGCTTTTCTTCCACCTATTGTACAGTGGAGGTTCCACCAAAAGACATTGAGCACCTTCCAGATATTAAAAGGAATGGTTACGAATTTTCTGATGGTATAGGAAAAATTACACCAGATCTTGCCAGGGAAGTTGTTCAAGCACTGCAGTTGAATTTCAACCCTCCCTCAGCGTTTCAGATCAGGTATGGTGGATACAAGGGCGTGGTTGCAACTTGGGCAGCAGAACCAGGAAGTAAATTTAAGCTCTCATTGAGACCCAGTATGAAGAAGTTTGAGTCTGAACACACA

Fln Alignment:

Contig989___LCGRGYLFLAFSANQLRDRSAWFFAEGKDITVRHIKHWMGNFPQGNVAKHAARMGQCFSSTYCTVEVPPKDI-EHLPDIKRNGYEFSDGIGKITPDLAREVVQALQLNFNPPSAFQIRYGGYKGVVATWAAEPGSKFKLSLRPSMKKFESEH
Q8LHH9________________MCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGH-GDGTRLFLRPSMRKFESNH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain