SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene968

Length: 1250 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene968 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5441	26/27
SustainPine v2.0	sp_v2.0_unigene78959	1/27

Source	Descriptions	Term	Type	Identity
AutoFact	Rac-like GTP binding protein n=1 Tax=Picea mariana RepID=O65062_PICMA	-	-	88%
FL-Next	tr=Rac-like GTP binding protein; Picea mariana (Black spruce) (Abies mariana).	-	-	96%
Blast2go	rop-family small gtpase	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	96%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	96%
Blast2go	protein transport	GO:0015031	Biological Process	96%
Blast2go	GTPase activity	GO:0003924	Molecular Function	96%
Blast2go	protein kinase binding	GO:0019901	Molecular Function	96%
Blast2go	GTP binding	GO:0005525	Molecular Function	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	spindle	GO:0005819	Cellular Component	96%
Blast2go	cytoplasm	GO:0005737	Cellular Component	96%
Blast2go	site of polarized growth	GO:0030427	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rho type	IPR003578	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: O65062

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 18 aas, your sequence is shorter than subject: 181 - 198

Fln protein: MSTCKFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKPSYENITKKWLPELRHFAPGVPIVIVGTKLDLRDDKQFFADHPGAVPITTAQGEELKKQIGASAYIECSSKTQQNIKAVFDSAIRVVLCL*

Protein Length: 182

Fln nts: GCTGGCGGAAGCAAACGTGGTGGCGGTCATGATTCATTGATTGATCTTAGGGTCATATAAGGGGCCTTGGAAAGGGGCATTTTTGCAGCTCTCGTTAATTAACCCGACGGAGAATGATGAATTGAAGGGCTATCATCTCAAGGCAGAGGGG_-_ATGAGTACCTGTAAATTCATAAAATGTGTGACTGTCGGGGACGGAGCTGTAGGCAAGACCTGTATGCTCATTTCGTATACGAGCAATACTTTTCCAACTGATTATGTACCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTGGATGGCAACACAGTGAACCTTGGCCTGTGGGATACAGCAGGTCAAGAGGACTACAATAGATTAAGACCTCTGAGCTACAGGGGAGCAGATGTTTTTATTCTGGCATTTTCTCTTATTAGCAAGCCAAGCTATGAGAATATTACCAAAAAGTGGCTTCCTGAACTGAGGCATTTTGCACCCGGTGTTCCAATAGTTATCGTTGGAACTAAACTAGATCTTCGGGATGACAAACAGTTTTTTGCTGATCACCCTGGTGCTGTGCCTATAACAACTGCTCAAGGGGAAGAGTTGAAGAAGCAAATTGGTGCTTCTGCATACATAGAGTGCAGTTCAAAAACACAACAGAATATCAAAGCCGTCTTTGATTCAGCCATCAGGGTGGTGCTGTGCCTTTAA___CCTCCAAAGCAGAAGAGAAAAAAGAAAAGGAAATCTCAGAAGAATTGTTCAATCTTGTGATTGGTGAATTATTGGCAAACATGTTGCATATGGAATTTTGAACTTATGCATTACAGAATGGAAAATTATGTGCTGAGATGGCATACTTGAATCTGGTGACTTTATTGATGCGTTGTAGCTCTCTGCAGTAGACCTCAGTATGTATAGTTGTCATGAGAGCTCAATGACAAATATTTAGTGGTCTTGTTGAGTTCCCTGTGGTGGTGTCCCACAGAAGGAACAGAACTGTAATAACAAATTTTTGCATAATATTTAATTATTATATAGAAGCTTATCATTATGCATATAGTAAAGCTACTTTCTGGAATCACATCAGCCACCGGTTTATTTGGTGGTCTATGATCTTCAATTAATTCAATGTCTTTAGTTATTTGTAGGAGAGATTGTAGTGAATAGAGGGTGAAAATAAGAGGGGATCTTCTTCCCGTGGGAATAAACTCGTTACTGTTCAATCATACAAGTTGTATCTATGAAGCTGTGTTTCAAATTCCTGTAC

Fln Alignment:

Contig968___MSTCKFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKPSYENITKKWLPELRHFAPGVPIVIVGTKLDLRDDKQFFADHPGAVPITTAQGEELKKQIGASAYIECSSKTQQNIKAVFDSAIRVVL
O65062________________MSTCKFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIMKKWLLELRHFAPGVPIVLVGTKLDLRDDKQFFTDHPSAVPITTAQGEELKKQIGAAAYIECSSKTQQNIKAVFDSAIRVVL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
269	25	75			0.996473
270	75			25	0.996473
314			88	11	0.923564
315	88			11	0.923564
365	12			87	0.992554
369		87		12	0.992554
755	16		83		0.994512
758	83		16		0.994512
759	83			16	0.994512
1005	16		83		0.994512
1006		16	83		0.994512
1008	83			16	0.994512
1009	83			16	0.994512
1030	14			85	0.993533
1032	85			14	0.993533
1117	20		80		0.995493
1121	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain