SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene938

Length: 1591 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene938 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17156	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 7 homolog A n=26 Tax=Embryophyta RepID=PRS7A_ARATH	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	regulatory particle triple-a 1a	-	-	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	97%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	97%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	97%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	97%
Blast2go	plasma membrane	GO:0005886	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL88

Fln msg: Overlapping hits, possible frame ERROR between 976 and 955,

Fln protein: MAPDPEEDLTEKNPRPLDEDDIALLKTYGLGPYSTAIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARxxxxxxxxxDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN*

Protein Length: 427

Fln nts: CTGCCCAGAAACAGATGCAAACATTGTAGAGATTAAATATTACAAATCCTTGACAGAACATCGCAGGGGCACATAGACTAAATATTACAAACCCTAGATATGCGGACTTTGTAAATATTAAACATTGCATAAACTAAGATAGCAGGAGCACATAGTTTGATTTGGAGACTTTCCTGAAGAC_-_ATGGCTCCCGATCCAGAGGAAGACTTGACGGAGAAGAACCCCAGGCCTCTCGACGAGGACGACATTGCTCTGCTCAAAACCTATGGCTTGGGTCCTTATTCGACTGCTATAAAGAAAGCAGAGAAAGAAATCAAAGAAATGGCAAAGAAGGTTAACGATCTATGCGGGATTAAAGAATCGGACACCGGCTTAGCTGCTCCTAGTCAGTGGGATCTTGTTTCCGACAAGCAAATGATGCAGGAGGAACAGCCCCTCCAGGTAGCGAGGTGCACAAAGATCATTAATCCAAACACTGATGATTCTAAGTATGTTATAAATGTTAAACAAATTGCCAAGTTTGTGGTTGGACTAGGTGATAAAGTCTCCCCTACTGATATTGAAGAAGGCATGCGTGTCGGGGTTGATCGCAATAAGTATCAGATTCAGATCCCTTTGCCTCCTAAGATTGATCCTAGTGTGACAATGATGACTGTTGAAGAAAAGCCAGATGTTACTTACAATGATGTTGGAGGTTGCAAAGAACAAATCGAAAAGATGCGAGAGGTTGTGGAGCTTCCAATGCTTCATCCAGAGAAATTTGTGAAGCTAGGAATAGATCCTCCTAAAGGTGTCCTTTGCTATGGTCCTCCTGGCACAGGGAAAACACTATTAGCTAGAGCAGTGGCCAATCGTACTGATGCATGCTTCATTCGAGTTATTGGAAGTGAGCTTGTTCAAAAATATGTTGGTGAAGGTGCTCGGATGGTTCGGGAGCTTTTTCAGATGGCCCGGxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGAAGTGGATGCCATAGGTGGTGCTCGCTTTGATGATGGTTTAGGTGGTGACAATGAAGTACAACGGACCATGCTTGAAATAGTGAACCAATTGGATGGTTTTGATGCTCGTGGAAACATTAAAGTTCTTATGGCTACTAACAGGCCCGACACACTTGATCCAGCATTATTACGGCCAGGTCGATTGGACCGAAAGGTTGAATTTGGCTTACCTGATTTGGAAAGCAGGACTCAAATTTTTAAAATCCATACACGGACCATGAATTGTGAGAGAGACATTCGTTTTGAGTTGCTTTCTCGGTTATGCCCCAATTCTACAGGTGCTGACATACGTAGTGTATGTACGGAGGCTGGCATGTATGCTATTCGAGCACGTAGAAAGACAGTTACCGAGAAAGATTTTCTTGAAGCTGTGAACAAGGTTATTAAAGGTTACCAAAAGTTTAGTGCAACACCCAAATATATGGTGTACAACTGA___AAAATGCTTCTGCATTTGACGTTTTGTATTGAATGGTATTGAGCACAGCCATTCAACATCTCAATATCTGTTTTCAACTTTATGTTTAGCTTTTATGCTTTCCAAAAATTCTACAGGTGAATTTTCTTATTCA

Fln Alignment:

Contig938___MAPDPEEDLTEKNPRPLDEDDIALLKTYGLGPYSTXXXXXXXXXXXXXXKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSxxxxxxxFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN
B8LL88________________MAPDPEEDLTEKNPRPLDEDDIALLKTYGLGPYSTAIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSxxxxxxxFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN

SNPs (tot: 3)

Position	A %	C %	G %	Probability
743		20	80	0.995493
827		33	66	0.997452
828	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain