SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene890

Length: 694 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene890 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11436	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB	-	-	95%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Blast2go	homeobox-leucine zipper protein hdg2-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	85%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	85%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	85%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Lipid-binding START	IPR002913	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
350	80			20	0.995493
352	20			80	0.995493
436	16	83			0.994512
439	83		16		0.994512
440	83			16	0.994512
456	16		83		0.994512
460		87		12	0.992554
621	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain