SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene889

Length: 435 nt

UniGene Fasta

>biog3_v1.0_unigene889
AATGTTGGTATTTATCTCTGTGCTGTCAGATCACAGATGAGAGTCTGGGGCATGTGGCAGCCATCCTTGGAAATCATTTGGTTTCCATCAATCTTTCCAAGTTGTGGACTTTCACTCACCTGGGTCTGCTTCAGTTGATTAAAAGTTGCCAGTCTTTAGTCGAAATTGATCTTTCCAATTGCGCTGAAATCACAGATTATGGGGCAGAAGCCATAGCACAAGCCCATGAGTTGCAATCATTGAAGCTAGTGAAATGTAAGCAGATTACTGACATGGGTCTTGGATGCATTGCTGTGGGCTGTAGTAAATTACAGACTTTGAATCTTAGGTGGTGTGTGGGGGTCACTGATCTTGGAGTTGAGCTGGTTGTTGTGAATGTAAAGAGTTACGTAATCTTGATCTCTCTTACTCACAGAGACTTGATGTTTCAACATT

Ace file of the UniGene biog3_v1.0_unigene889

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3498	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_58.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SR46_VITVI	-	-	1.99993e-41	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	f-box lrr-repeat protein 3-like	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	68%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAR0

Fln msg: Distance to subject end: 72 aas, your sequence is shorter than subject: 144 - 262

Fln protein: CWYLSLCCQITDESLGHVAAILGNHLVSINLSKLWTFTHLGLLQLIKSCQSLVEIDLSNCAEITDYGAEAIAQAHELQSLKLVKCKQITDMGLGCIAVGCSKLQTLNLRWCVGVTDLGVELVVVNVKSYVILISLTHRDLMFQH

Protein Length: 145

Fln nts: AATGTTGGTATTTATCTCTGTGCTGTCAGATCACAGATGAGAGTCTGGGGCATGTGGCAGCCATCCTTGGAAATCATTTGGTTTCCATCAATCTTTCCAAGTTGTGGACTTTCACTCACCTGGGTCTGCTTCAGTTGATTAAAAGTTGCCAGTCTTTAGTCGAAATTGATCTTTCCAATTGCGCTGAAATCACAGATTATGGGGCAGAAGCCATAGCACAAGCCCATGAGTTGCAATCATTGAAGCTAGTGAAATGTAAGCAGATTACTGACATGGGTCTTGGATGCATTGCTGTGGGCTGTAGTAAATTACAGACTTTGAATCTTAGGTGGTGTGTGGGGGTCACTGATCTTGGAGTTGAGCTGGTTGTTGTGAATGTAAAGAGTTACGTAATCTTGATCTCTCTTACTCACAGAGACTTGATGTTTCAACATT

Fln Alignment:

Contig889___LSLCCQITDESLGHVAAILGNHLVSINLSKLWTFTHLGLLQLIKSCQSLVEIDLSNCAEITDYGAEAIAQAHELQSLKLVKCKQITDMGLGCIAVGCSKLQTLNLRWCVGVTDLGV
D5AAR0________________LGFCPNISNEGIAHIGARC-SYLQELDLYRSVGVGDVGLAAIANGCPRLKSINVSYCIHVTDNGLTSLAQLQKLHQLEIRGCSGISSAGLSAIALGCKRIVELDIKRCYGVDDVGI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
99	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain