SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene884

Length: 387 nt

UniGene Fasta

>biog3_v1.0_unigene884
AATGTCCAGAAAACAGGTTACACAGTCAGTTATAAAGGGAGAAATAGTGAGTGAAGTATATCAACAACTTTCCCCATGGGTGTCACAGGTAGTTAGATTGTACAAAAATGCAGATGACGCTGAAATCGATTTCATGGTTGGGCCAATTCCGATTGATGATGACTTGGGGAAGGAGGTCATCACACGATTCACAACAAATATTCCATCAAACAAGGAGTTCTTCACTGATTCCAATGGTCGAGATTTTCTGAAGAGAGTAAGGAATTATAGAAAGGATTGGAACTTGAGCGTACATGAACTAATTGCAGGAAATTACTACCCTTTGAATCTAGGCATCTACCTGAAGGACAACGAGACAGAGTTTTCTTTGCTTGTTGATCGTACATT

Ace file of the UniGene biog3_v1.0_unigene884

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3623	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] ref\|NP_851037.2\| Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] gb\|AAM20555.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AAN15620.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AED	-	-	48%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	66%
Blast2go	lysosomal alpha-mannosidase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	71%
Blast2go	cation binding	GO:0043169	Molecular Function	71%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	71%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	71%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	71%
Blast2go	apoplast	GO:0048046	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SGT5

Fln msg: Distance to subject end: 231 aas, your sequence is shorter than subject: 128 - 1090

Fln protein: MSRKQVTQSVIKGEIVSEVYQQLSPWVSQVVRLYKNADDAEIDFMVGPIPIDDDLGKEVITRFTTNIPSNKEFFTDSNGRDFLKRVRNYRKDWNLSVHELIAGNYYPLNLGIYLKDNETEFSLLVDRT

Protein Length: 129

Fln nts: AATGTCCAGAAAACAGGTTACACAGTCAGTTATAAAGGGAGAAATAGTGAGTGAAGTATATCAACAACTTTCCCCATGGGTGTCACAGGTAGTTAGATTGTACAAAAATGCAGATGACGCTGAAATCGATTTCATGGTTGGGCCAATTCCGATTGATGATGACTTGGGGAAGGAGGTCATCACACGATTCACAACAAATATTCCATCAAACAAGGAGTTCTTCACTGATTCCAATGGTCGAGATTTTCTGAAGAGAGTAAGGAATTATAGAAAGGATTGGAACTTGAGCGTACATGAACTAATTGCAGGAAATTACTACCCTTTGAATCTAGGCATCTACCTGAAGGACAACGAGACAGAGTTTTCTTTGCTTGTTGATCGTACATT

Fln Alignment:

Contig884___SVIKGEIVSEVYQQLSPWVSQVVRLYKNADDAEIDFMVGPIPIDDDLGKEVITRFTTNIPSNKEFFTDSNGRDFLKRVRNYRKDWNLSVHELIAGNYYPLNLGIYLKDNETEFSLLVDR
A9SGT5________________TVFRGPLVEEVHQQFSPWASQVIRVYKNAEQAEVQFTVGPIPIDDSNGKEIVTKFTTPLRTEKTFYTDSNGRDFLKRVRDFRPDWNLEVKEPVAGNYYPLNLGIYMKDSETDVSVLVDR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
262	25		75		0.996473
263	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain