SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene883

Length: 693 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene883 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4546	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Phytosulfokine receptor, putative n=1 Tax=Ricinus communis RepID=B9SQH2_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	phytosulfokine receptor 2-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	67%
Blast2go	phosphorylation	GO:0016310	Biological Process	67%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	67%
Blast2go	peptide receptor activity	GO:0001653	Molecular Function	67%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
524	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain