SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene880

Length: 374 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene880
TGCTGGATCAGCATTATTTAGGCTTCCAGAAAACAATGAGGTGTTGGAGTACCGTGTGTATATCAAGGCAGATAGAGTTTCTCCATTTGATCTTGCAGCTAGTTGGAGAGCTTACCTGGAAAACCTACAACCATCAACTGTGCGTGGGATACCTGATGTTAGCATTCATGATATTCCTGTAACTGGTTCAGAGGACTTGGGGGTGTCACTACCATATTCCCCAAATTCGTCTGCATCTCAAGAAATGGCGGAATCCAAGTCTATGGGCCCTGATTCATCTGGACATAGACATGACTATCATCGGGGATTGTTTGTAGACAGGGGTGTGGGGAACTCGCCTAAAACTGTACGCTCAGAAGGCGCTGCGAGGTTAT

Ace file of the UniGene biog3_v1.0_unigene880 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10301	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Fructose-6-phosphate,2-kinase/fructose-2, 6-bisphosphatase, putative n=1 Tax=Ricinus communis RepID=B9RL84_RICCO	-	-	49%
FL-Next	tr=Fructose-6-phosphate,2-kinase/fructose-2, 6-bisphosphatase, putative; Ricinus communis (Castor bean).	-	-	39%
Blast2go	fructose-6-phosphate-2-kinase fructose- -bisphosphatase	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-2,6-bisphosphate 2-phosphatase.	EC:3.1.3.46	-	0.0	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		0.0	69%
Blast2go	6-phosphofructo-2-kinase.	EC:2.7.1.105	-	0.0	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	69%
Blast2go	fructose 2,6-bisphosphate metabolic process	GO:0006003	Biological Process	69%
Blast2go	fructose-2,6-bisphosphate 2-phosphatase activity	GO:0004331	Molecular Function	69%
Blast2go	6-phosphofructo-2-kinase activity	GO:0003873	Molecular Function	69%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	cytosol	GO:0005829	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Carbohydrate binding module family 20	IPR002044	-	-
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase	IPR016260	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RL84

Fln msg: Distance to subject end: 406 aas, your sequence is shorter than subject: 124 - 712

Fln protein: AGSALFRLPENNEVLEYRVYIKADRVSPFDLAASWRAYLENLQPSTVRGIPDVSIHDIPVTGSEDLGVSLPYSPNSSASQEMAESKSMGPDSSGHRHDYHRGLFVDRGVGNSPKTVRSEGAARL

Protein Length: 125

Fln nts: TGCTGGATCAGCATTATTTAGGCTTCCAGAAAACAATGAGGTGTTGGAGTACCGTGTGTATATCAAGGCAGATAGAGTTTCTCCATTTGATCTTGCAGCTAGTTGGAGAGCTTACCTGGAAAACCTACAACCATCAACTGTGCGTGGGATACCTGATGTTAGCATTCATGATATTCCTGTAACTGGTTCAGAGGACTTGGGGGTGTCACTACCATATTCCCCAAATTCGTCTGCATCTCAAGAAATGGCGGAATCCAAGTCTATGGGCCCTGATTCATCTGGACATAGACATGACTATCATCGGGGATTGTTTGTAGACAGGGGTGTGGGGAACTCGCCTAAAACTGTACGCTCAGAAGGCGCTGCGAGGTTAT

Fln Alignment:

Contig880___ALFRLPENNEVLEYRVYIKADRVSPFDLAASWRAYLENLQPSTVRGIPDVSIHDIPVTGSE-------DLGVSLPYSPNSSASQEM--AESKSMGP-----DSSGH--------------------------------------------------RHDYHRGLFVDRGVGNSPKTVRSEGA
B9RL84________________AVFKIAD--EVLEYRVFIKADRVSPFDLAASWRAYQENLQPSTVRGIPDVSINSAPESGAENSASLELDLEHYVVPAPSTSANSGLVYAANNAENPRFHTADGSGNASYSCKDGGLSVDRPAPIKEMEVSIPDPSKVYSGSGMVESKSVGTFSPLQKQDGHRGLYVDRGVG-SPRLVKSSSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain