SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene874

Length: 1312 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene874

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9092	49/49

Source	Descriptions	Term	Type	Identity
AutoFact	Ccaat-binding transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RHZ1_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	ccaat-binding transcription	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	0.0	73%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTJ8

Fln msg:

Fln protein: MEQQAPGQQQPVMGVVSGPPQMPYGTAPYQTAQLVAPVAPASVVGTVQSPGQPASAYPATAAQLAAQHQLAYQHLHQQQQQQQQQQLQIFWANQMHDIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDELKEEGLGIPRGPVPVGTPAEAIPYYYVPQQHPAAQVAPPGMIVGKPVDPAMYAQQPRPPVAYMPQQMWPQQQMPEQSRGPSSSS*

Protein Length: 274

Fln nts: AATGTGTGGGTTTGTGGAAACGAAAGTTTTGCCCATTTGCGGAAAGTGTAGGATCGGAGGCATCAGGGTTTTCTGCGAAAGAAATAAGTGGATTTAAGTGGGAGTCGGACCAGTTGGAGCTGCTGCTACTCTGGGTGTGTTTATTGTGGGATATTTCCCTACCGACTCCATTAGAAACAGGAGTCGGAATTGAGAGGAGAAAGAGGTAGTGAACAAGGGCTTTGTGGAGATCTCACGTGAGAAA_-_ATGGAGCAGCAAGCCCCAGGCCAGCAGCAGCCAGTTATGGGGGTTGTCAGTGGTCCACCTCAGATGCCCTATGGTACAGCGCCTTATCAAACAGCTCAGTTGGTTGCACCGGTTGCTCCAGCATCTGTTGTTGGAACTGTTCAGTCTCCTGGCCAGCCTGCATCTGCATATCCTGCAACTGCTGCTCAGCTAGCTGCACAACATCAGTTGGCTTACCAACATCTTCATCAGCAACAACAACAGCAGCAACAGCAACAGCTACAGATTTTTTGGGCTAATCAGATGCATGATATAGAACAGACGTCAGACTTCAAGAACCATAGTTTGCCATTGGCTAGAATCAAGAAAATTATGAAGGCAGATGAAGATGTGAGGATGATTTCAGCTGAGGCGCCTGTGATTTTTGCAAAAGCTTGTGAAATGTTCATTTTGGAGCTTACCCTGCGCTCATGGATTCATACAGAAGAAAATAAGCGACGCACTTTACAGAAGAATGACATTGCAGCTGCCATAACTAGAACAGATATCTTTGATTTCCTAGTGGATATTGTACCAAGAGATGAGTTGAAGGAGGAGGGTCTTGGCATTCCCAGAGGACCTGTACCTGTTGGAACCCCAGCCGAAGCTATACCATATTATTATGTTCCTCAGCAGCATCCAGCAGCACAGGTTGCACCTCCTGGAATGATTGTTGGCAAGCCAGTGGATCCTGCAATGTATGCTCAACAACCCCGCCCTCCTGTTGCTTATATGCCGCAGCAGATGTGGCCACAACAACAAATGCCAGAGCAGTCGAGGGGCCCATCCTCTAGCAGTTAG___GTGCTTTGAGTTGTTTTCTGTTGCCAGCAACAGGTAGATGGTAAGAGGGAAAATGACAAAGCCCTATTTTGATAATGTTGAAAGGCATTTGCTCAAGTTCACTCTGGTAAGATTTATTTTACCTGGCCTATAGAAATGAATTATAAACCAAGGATCATTTCGAGCAAGTTCTTGTGTTTTTTGTTGAACTTTCCAGGCCTTCACAACTATAAAATTCTGGCTGGATATTTTCAAAAAATTGTTTACATT

Fln Alignment:

Contig874___IFWANQMHDIEQTSDFKNHSLPLARIKKIMKAD-EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDELKEE---GLGIPRGPVPVGTP-------AEAIPYYYXXXXXXXXXXXXXGMIVGKPVDPAMYAQQPRPPVAY
A9NTJ8________________VFWANQMQEIEQAVDFRNHSLPLARIKKIMKSDDENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIVPRDELKEDQVINLGNPRSALSVGSSSTNAAAGANSFPYYY----LPNQHSVPHGVFVGKPMDPTIYMQQPQSPVAY

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
135	25		75		0.996473
136	25		75		0.996473
322	10	90			0.90298
323	90			10	0.90298
678	10		90		0.90298
719	10		90		0.90298
723		90		10	0.90298
724			90	10	0.90298
737	10		90		0.90298
738	90			10	0.90298
739	90		10		0.90298
747	10		90		0.90298
751		90		10	0.90298
762	88			11	0.923564
768	12		87		0.992554
771	87			12	0.992554
1010	11		88		0.923564
1011	11			88	0.923564
1041		46	53		1.0
1126			80	20	0.999996
1127		80		20	0.999996
1171		14	85		0.993533
1172	14		85		0.993533
1174	85			14	0.993533
1191	16		83		0.994512
1193	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain