SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene846

Length: 236 nt

UniGene Fasta

>biog3_v1.0_unigene846
AATGTTTACTTCTCAGTGGGATTCCTCCCTTTTGGGGTAAGACAAAATCGAAGATTTTTGATGCAGTCAGAGAAGCCAAGCTGCAATTTCCAAAGGACAATTGGGGCAGTATATCTTCTTCTGCCAAGGATTTGATCTCCAGAATGCTATGCACAGATCCAAAGAAGAGGCTTACCTCTGTGGAAGTGTTAGAGCATCCTTGGATCACTGGTCAAGTAGAGTTATCAAGGCATAGC

Ace file of the UniGene biog3_v1.0_unigene846

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2486	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	CDPK-like protein n=1 Tax=Solanum tuberosum RepID=Q8LPM2_SOLTU	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	calcium-dependent protein kinase	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	0.0	64%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP72

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 78 - 283

Fln protein: CLLLSGIPPFWGKTKSKIFDAVREAKLQFPKDNWGSISSSAKDLISRMLCTDPKKRLTSVEVLEHPWITGQVELSRHS

Protein Length: 79

Fln nts: AATGTTTACTTCTCAGTGGGATTCCTCCCTTTTGGGGTAAGACAAAATCGAAGATTTTTGATGCAGTCAGAGAAGCCAAGCTGCAATTTCCAAAGGACAATTGGGGCAGTATATCTTCTTCTGCCAAGGATTTGATCTCCAGAATGCTATGCACAGATCCAAAGAAGAGGCTTACCTCTGTGGAAGTGTTAGAGCATCCTTGGATCACTGGTCAAGTAGAGTTATCAAGGCATAGC

Fln Alignment:

Contig846___LLLSGIPPFWGKTKSKIFDAVREAKLQFPKDNWGSISSSAKDLISRMLCTDPKKRLTSVEVLEHPWIT
B8LP72________________IMLSGVAPFLGDTPQEIFEAVLCGRLRFPSDPWLSISNSAKDLIRRMVCRDVTKRLSAHQVLEHPWIT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
82	33		66		0.997452
83	33	66			0.997452
87	66			33	0.997452
172		20	80		0.995493
173	20	80			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain