SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene840

Length: 1790 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene840

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19057	72/72

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] gb\|AAL67015.1\| putative DNA binding protein ACBF [Arabidopsis thaliana] gb\|AAM45052.1\| putative DNA binding protein ACBF [Arabidopsis thaliana] gb\|AED92689.1\| RNA recognition motif-containing	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	uncharacterized rna-binding isoform 1	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Domain of unknown function DUF1767	IPR013894	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SL59

Fln msg: your sequence is shorter than subject: 426 - 445

Fln protein: MMQQQTQQQYQQPQYSNDEIRTLWIGDLQYWVDENYLHTCFSQTGEVVSIKVIRNKATGYPEGYGFVEFISHAAAERILQTYNGTQMPGTEQLYRLNWASFGLGERRLLTGPEHSIFVGDLAPDVTDYLLQETFRSRYPSVRGAKVVTDPSTGCSKGYGFVKFVDETERNRAMTEMNGVYCSTRPMRISAATPKKSVGYQQQYTPKVAYQTPTYSAAPAQVFQSDDLNNTTIFVGGLDPTVSEEDLRQIFGQFGELVYVKIPVNKGCGFVQFGNRACAEEALQRVHGTVIGQQTVRLSWGRSPATKQDQPAGWGQVQADPNQWNAAYYGYGQGYDAYGYAAPQDPSAYGYGAYPATMNYQQQTEVQDLSAAGMTNTIQVPDHKEEEIFDPLAPPDVEKLNAAYIALHEPWLVGRNFWLKSSELSA*

Protein Length: 427

Fln nts: ATAAAACCCTAAATCTCTGCACTCGCCAGCTACGATTTATTCTGCCTCCAGCATTTTCGTCCTTACCAGTTTCGTCCTCCTTGCCTCCAGCGGTTTCGACACATAGCCGCTGCGATTCTGGGGAGTTTCTTTGGCTTAGATTTTTGGGGTAAAATTCTGGGTATTGTGGTTTGCTCACACTAATTATACTGTCATGGATCATCAACAGCAGCAGTGGA_-_ATGATGCAGCAACAAACTCAACAACAGTATCAGCAGCCGCAGTATTCGAATGACGAAATCCGGACACTGTGGATCGGGGATTTGCAGTATTGGGTCGATGAAAATTATCTCCATACTTGCTTTTCGCAAACCGGAGAGGTTGTTTCTATAAAGGTGATTCGGAACAAAGCTACAGGCTATCCGGAAGGTTATGGTTTTGTGGAGTTTATTTCCCATGCAGCAGCTGAGAGGATTCTTCAAACATACAATGGTACACAGATGCCTGGCACAGAGCAACTTTATAGATTAAATTGGGCTTCCTTTGGTTTAGGAGAAAGGCGCCTTTTAACAGGACCGGAGCATTCTATATTTGTGGGAGATTTGGCTCCAGATGTCACAGATTATTTGCTACAAGAGACTTTTCGATCTCGATACCCATCAGTGAGAGGTGCAAAGGTTGTGACAGATCCCTCTACAGGCTGTTCAAAAGGTTATGGATTTGTTAAGTTTGTTGATGAGACTGAGAGAAATCGTGCCATGACGGAAATGAATGGTGTGTATTGTTCTACGAGACCTATGCGCATTAGTGCAGCTACACCAAAGAAGTCTGTGGGTTATCAACAACAATACACTCCTAAAGTTGCCTATCAAACACCAACCTATAGTGCGGCACCTGCTCAAGTGTTTCAATCAGATGATCTAAACAATACTACAATATTTGTTGGTGGCTTGGATCCAACTGTCTCGGAGGAAGATCTAAGGCAAATCTTTGGCCAGTTTGGGGAACTTGTATATGTCAAAATACCTGTTAACAAGGGATGTGGATTTGTGCAGTTTGGTAACAGGGCCTGTGCTGAGGAAGCATTGCAAAGGGTACATGGTACTGTTATTGGTCAGCAGACTGTGCGCCTTTCCTGGGGTCGAAGTCCTGCAACCAAGCAGGACCAGCCAGCGGGGTGGGGTCAGGTTCAAGCAGATCCAAATCAGTGGAATGCAGCTTACTATGGTTATGGGCAGGGGTATGATGCTTATGGTTATGCTGCACCTCAAGATCCATCAGCATATGGTTATGGGGCATACCCTGCTACAATGAATTATCAGCAACAGACTGAGGTTCAAGATTTATCAGCAGCTGGAATGACAAACACCATTCAAGTTCCGGACCATAAGGAAGAGGAAATATTTGATCCTTTGGCTCCTCCTGATGTTGAAAAGTTGAATGCAGCATATATTGCTCTCCACGAGCCCTGGTTGGTTGGGAGAAACTTTTGGTTGAAGTCCTCTGAACTGTCGGCTTAG___ACTACAGTTTTATACCAGCGGATATTTAGGTGTTACTTCAAATGTATTTTAAAGACGCTTCCTTAACACTGGTGAGCATCCCCACCCATGAAGTGGGATGTTGCTTAAGTTGTACACACCTGACCCAACATAATGGCCCTTGGAGGGAATGATGGCTCCACCTGGCCCAACTTGTAGACAATGGTTCCCTTGTGGGTAGCGTGCTGTGTCCTACTTGAGGCTCTAACCTTGTGTGGATTTCTTGCTTTCACCAACTTGACTGCCCTCTTGTGGCTATCCTTAACCTTAATTAGA

Fln Alignment:

Contig840___SNDEIRTLWIGDLQYWVDENYLHTCFSQTGEVVSIKVIRNKATGYPEGYGFVEFISHAAAERILQTYNGTQMPGTEQLYRLNWASFGLGERRLLTGPEHSIFVGDLAPDVTDYLLQETFRSRYPSVRGAKVVTDPSTGCSKGYGFVKFVDETERNRAMTEMNGVYCSTRPMRISAATPKKSVGYQQQY--TPKVAYQTPTYSAAPAQVFQSD-DLNNTTIFVGGLDPTVSEEDLRQIFGQFGELVYVKIPVNKGCGFVQFGNRACAEEALQRVHGTVIGQQTVRLSWGRSPATKQDQPAGWGQVQADPNQWNXXXXXXXXXXXXXXXXXXXXXSAYGYGAYPATMNYQQQTEVQDLSAAGMTNTIQVPDHKEEEIFDPLAPPDVEKLNAAYIALHEPWLVGRNFWLKSSELS
D7SL59________________SVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPTAKQDLPGSWGQ-QADPSQWSSAYYGYGQGYDAYPYGATQDPSLYAYGAYAGYLQYPQQARYYLAAMAGAVPAVE----QRDELYDPLATPDVDKLNAAYLAVHGSAILGRSLWLKTSPFS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1223	11		88		0.923564
1226			88	11	0.923564
1438		85		14	0.999981
1516			90	10	0.90298
1517		90		10	0.90298
1524	22			77	0.999999
1525		22		77	0.999999
1527			77	22	0.999999
1528	11		66	22	0.999999
1529		14		85	0.993533
1530	14		85		0.993533
1537	16	83			0.994512
1538	83	16			0.994512
1540	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain