SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene819

Length: 311 nt

UniGene Fasta

>biog3_v1.0_unigene819
GAAATTCATATTCATGTCATCTGTCACAGAACCACGTTTAGGATGGTCTCGTGAGACATCAGCAACAACGGGAAAGATCGCGAAAATAGATATGGACGGCACATTGAATGTGAAAGTGGCTGGCAGAAGTACGTTCTGGAAGGTTGCTCCAGGAGATGCTGAAAGACTATCAGGTTTTGAAGTTGGAGACTGGGTCAGACTTAAGCCAACTCTTGGGATCAGACCTAGCTATGATTGGCATGGGATTGGCAAAGACAGTTTTGCTGTGGTCCACAGTCTATCTGACACCGGTTACTTGGAGCTTGCAGGGT

Ace file of the UniGene biog3_v1.0_unigene819

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20590	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ankyrin-repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9RG78_RICCO	-	-	69%
FL-Next	sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress).	-	-	34%
Blast2go	at5g13530-like protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	81%
Blast2go	defense response	GO:0006952	Biological Process	81%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	81%
Blast2go	developmental growth	GO:0048589	Biological Process	81%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	81%
Blast2go	protein self-association	GO:0043621	Molecular Function	81%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	81%
Blast2go	early endosome	GO:0005769	Cellular Component	81%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FY48

Fln msg: Distance to subject end: 222 aas, your sequence is shorter than subject: 103 - 1625

Fln protein: KFIFMSSVTEPRLGWSRETSATTGKIAKIDMDGTLNVKVAGRSTFWKVAPGDAERLSGFEVGDWVRLKPTLGIRPSYDWHGIGKDSFAVVHSLSDTGYLELAG

Protein Length: 104

Fln nts: GAAATTCATATTCATGTCATCTGTCACAGAACCACGTTTAGGATGGTCTCGTGAGACATCAGCAACAACGGGAAAGATCGCGAAAATAGATATGGACGGCACATTGAATGTGAAAGTGGCTGGCAGAAGTACGTTCTGGAAGGTTGCTCCAGGAGATGCTGAAAGACTATCAGGTTTTGAAGTTGGAGACTGGGTCAGACTTAAGCCAACTCTTGGGATCAGACCTAGCTATGATTGGCATGGGATTGGCAAAGACAGTTTTGCTGTGGTCCACAGTCTATCTGACACCGGTTACTTGGAGCTTGCAGGGT

Fln Alignment:

Contig819___FMSSVTEPRLGWSRETSATTGKIAKIDMDGTLNVKVAGRSTFWKVAPGDAERLSGFEVGDWVRLKPTLGIRPSYDWHGIGKDSFAVVHSLSDTG
Q9FY48________________FQKGITEPRWGWRAAKPDSRGIITTVHADGEVRVAFFGLPGLWRGDPADLEVEPMFEVGEWVRLREGVSC-----WKSVGPGSVGVVHGVGYEG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
88	66		33		0.997452
89			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain