SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene809

Length: 2414 nt

UniGene Fasta

>biog3_v1.0_unigene809
GGAGTCGATGTTATCCAGGACGGCAGTCTAGATGCGTTGGGAAGAGGGAACATTTGGACGTTAGTGCCCTCAAAATGCGATATTTTGCGGAATCAATTCTCACCTTGTTTCGACCAATGTGACCACGCCATTCCTGAGGTCTGAATACCTTGCTGCCACTCTAGCTTTTATTGGATTTGGCTTTAGCTCCCACGATATTCACAGTGTCGACGATGATGGATAGGCCGGCCATGGCTCTGTGTGTGCTTTCAATTCTCATATCATGCAGCTTTGTATTGGTAAGAAGCGCATCGGATCACAGTTATAAAGTGGGAGACGAGGTGCCCCTGTATGTCAACAAGGTCGGCCCCTTTCAGAACCCCAGTGAGACATATCGTTATTTTGATTTGCCATTCTGTCCTCCAGATCACGTGACTGAAAAGAAGGAGGCTCTTGGAGAAGTCTTAAATGGTGATCGTATGGTTGATGCTAGGTATCGGTTAAAATTCCGGGTGGACAAAGAGACCAACTCCCTTTGCAAGAAGAAGCTTTCAAAAGAGGATCTAGCAAAGTTCAGGGATGCTGTTAAGAATGATTACTACTTTCAGATGTACTATGATGATCTGCCTATATGGGGCTTTGTTGGAAAGGTTGAAAATGAAAATAAAGGCGATGAGAAGAAGCCTAGGCATTTGCTTTACAGACATGTGCACTTTGATGTCCTATATAACGATGACCGAGTCATAGAAATCAGTGTGCATACAGATCCTCAGTACGCTGTGGATATTACCGAGGACAAAGAGATTGAGGTTGAGTTCATGTACTCTGTTAAGTGGAAAAAAACTGACATCCTCTTTGAACGCCGAATGGATAAATATGCGAAATCTTCATTTTTGCCACAGCACTTGGAAATTCATTGGTTCTCCATTATCAATTCGTGTGTAACTGTTCTTCTCCTGACGGGATTCCTGGCCACAATTCTCATGCGCATTCTGAAGAATGATTTTATCAAATACTCTCGTGATGAGGAGTCAATGGATGATCAAGAGGAGACAGGATGGAAGTACATTCATGGAGATGTTTTTCGATATCCTTCACATAAGTCTCTATTTTCTGCTGTTCTTGGCTCTGGAACTCAGCTGTTAGTACTTACTATCTTTATCTTTGTGCTTGCATTGGTGGGTGTTTTCTATCCATACAACAGGGGAGCCCTATATACTGCTCTTGTTGTTATATATGCTCTTACATCTGGCATAGCAGGCTACGTTGCAGCTTCCTTTTATGGTCAACTTGAAGGACGAAATTGGGTAAGGAACCTTTTGCTTACAGGTTGCCTCTTTTGTGGGCCGCTATTCTTAACCTTTTCCTTCCTGAACACAGTTGCAATAGCATACAATGCCACAGCAGCCTTGCCATTTGGTACTATTGTTGTGATTGTTCTCATCTGGACACTAATCACCTTTCCTTTGCTCGTGTTGGGCGGCATAGCTGGTAAGAACAGCAAGGCAGAGTTTCAAGCTCCATGCCGTACCACAAAGTATCCCCGGGAGATTCCACCATTACCATGGTACAGGAGGACCGTTCCTCAAATGGCAATGGCAGGCTTTTTGCCATTTAGTGCCATTTATATTGAGCTATATTACATTTTTGCAAGTATCTGGGGTCACAAGATTTATACAATATATAGCATTCTCTTCATTGTATTCATCATCCTCATCATTGTTACCTCGTTTATTACAATTGCATTAACATACTTTCAGCTTGCAGCAGAGGATCATGAATGGTGGTGGAGGTCTGTTTTATGTGGAGGATCAACTGGTTTGTTCGTGTTTGGATACTGTTTCTATTATTACTTTGCACGATCTGATATGACTGGCTTCATGCAAGTGTCATTCTTCTTTGGATACATGGCTTGCATATGTTATGGCTTCTTCCTAATGCTGGGAACAGTTGGATTCCAGTCTTCTTTACTGTTTGTTCGCCATATATACCGTTCCATTAAGTGTGAGTAAAACTCTTCCAGTGCAGAGCACGCAGATTTTGGTCTATCTGTCCATCCTGTAGATTAGTTGCAGATTATAATGGTCCTGGCTAGCATACTCCTTTGGACATGCTTGTCCAAAATGGAGTTGGGCGGTAAGCTCTTACCGTTAGGTGAATGCTTACATGTGGTAAGTTTCTAGGAAATAAGGTGAATAATGACACTGGCAGATTAGGCTGAGGTGAACAATTGAAGAACTAGTATATAGTTATGTTGATGAATAGTTACGGAGGCATGTTTTATCTCGAACAGCTTTGTTTGGTGATACCTATTGTCAGGCATAAGCCAATTTTTTAGGTCTCAAATCTATGGAGTAAGATGAATAAGCATCGAGCAAGCTTCAGGGATCTTCAAATGTTACCTTTCTGTTGGCCTGTATTTTATATTCCTGGTC

Ace file of the UniGene biog3_v1.0_unigene809

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15344	118/136
SustainPine v2.0	sp_v2.0_unigene15733	17/136

Source	Descriptions	Term	Type	Identity
AutoFact	putative endomembrane protein 70 [Arabidopsis thaliana] gb\|AAK96649.1\| T5E21.14/T5E21.14 [Arabidopsis thaliana] gb\|AAM16222.1\| At1g14670/T5E21.14 [Arabidopsis thaliana] gb\|AEE29200.1\| putative endomembrane protein 70 [Arabidopsis thaliana]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	transmembrane 9 superfamily protein member 1 precursor	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	87%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-
Sma3	Ribosomal protein L13, bacterial-type	IPR005823	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKM1

Fln msg:

Fln protein: MMDRPAMALCVLSILISCSFVLVRSASDHSYKVGDEVPLYVNKVGPFQNPSETYRYFDLPFCPPDHVTEKKEALGEVLNGDRMVDARYRLKFRVDKETNSLCKKKLSKEDLAKFRDAVKNDYYFQMYYDDLPIWGFVGKVENENKGDEKKPRHLLYRHVHFDVLYNDDRVIEISVHTDPQYAVDITEDKEIEVEFMYSVKWKKTDILFERRMDKYAKSSFLPQHLEIHWFSIINSCVTVLLLTGFLATILMRILKNDFIKYSRDEESMDDQEETGWKYIHGDVFRYPSHKSLFSAVLGSGTQLLVLTIFIFVLALVGVFYPYNRGALYTALVVIYALTSGIAGYVAASFYGQLEGRNWVRNLLLTGCLFCGPLFLTFSFLNTVAIAYNATAALPFGTIVVIVLIWTLITFPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRRTVPQMAMAGFLPFSAIYIELYYIFASIWGHKIYTIYSILFIVFIILIIVTSFITIALTYFQLAAEDHEWWWRSVLCGGSTGLFVFGYCFYYYFARSDMTGFMQVSFFFGYMACICYGFFLMLGTVGFQSSLLFVRHIYRSIKCE*

Protein Length: 594

Fln nts: GGAGTCGATGTTATCCAGGACGGCAGTCTAGATGCGTTGGGAAGAGGGAACATTTGGACGTTAGTGCCCTCAAAATGCGATATTTTGCGGAATCAATTCTCACCTTGTTTCGACCAATGTGACCACGCCATTCCTGAGGTCTGAATACCTTGCTGCCACTCTAGCTTTTATTGGATTTGGCTTTAGCTCCCACGATATTCACAGTGTCGACG_-_ATGATGGATAGGCCGGCCATGGCTCTGTGTGTGCTTTCAATTCTCATATCATGCAGCTTTGTATTGGTAAGAAGCGCATCGGATCACAGTTATAAAGTGGGAGACGAGGTGCCCCTGTATGTCAACAAGGTCGGCCCCTTTCAGAACCCCAGTGAGACATATCGTTATTTTGATTTGCCATTCTGTCCTCCAGATCACGTGACTGAAAAGAAGGAGGCTCTTGGAGAAGTCTTAAATGGTGATCGTATGGTTGATGCTAGGTATCGGTTAAAATTCCGGGTGGACAAAGAGACCAACTCCCTTTGCAAGAAGAAGCTTTCAAAAGAGGATCTAGCAAAGTTCAGGGATGCTGTTAAGAATGATTACTACTTTCAGATGTACTATGATGATCTGCCTATATGGGGCTTTGTTGGAAAGGTTGAAAATGAAAATAAAGGCGATGAGAAGAAGCCTAGGCATTTGCTTTACAGACATGTGCACTTTGATGTCCTATATAACGATGACCGAGTCATAGAAATCAGTGTGCATACAGATCCTCAGTACGCTGTGGATATTACCGAGGACAAAGAGATTGAGGTTGAGTTCATGTACTCTGTTAAGTGGAAAAAAACTGACATCCTCTTTGAACGCCGAATGGATAAATATGCGAAATCTTCATTTTTGCCACAGCACTTGGAAATTCATTGGTTCTCCATTATCAATTCGTGTGTAACTGTTCTTCTCCTGACGGGATTCCTGGCCACAATTCTCATGCGCATTCTGAAGAATGATTTTATCAAATACTCTCGTGATGAGGAGTCAATGGATGATCAAGAGGAGACAGGATGGAAGTACATTCATGGAGATGTTTTTCGATATCCTTCACATAAGTCTCTATTTTCTGCTGTTCTTGGCTCTGGAACTCAGCTGTTAGTACTTACTATCTTTATCTTTGTGCTTGCATTGGTGGGTGTTTTCTATCCATACAACAGGGGAGCCCTATATACTGCTCTTGTTGTTATATATGCTCTTACATCTGGCATAGCAGGCTACGTTGCAGCTTCCTTTTATGGTCAACTTGAAGGACGAAATTGGGTAAGGAACCTTTTGCTTACAGGTTGCCTCTTTTGTGGGCCGCTATTCTTAACCTTTTCCTTCCTGAACACAGTTGCAATAGCATACAATGCCACAGCAGCCTTGCCATTTGGTACTATTGTTGTGATTGTTCTCATCTGGACACTAATCACCTTTCCTTTGCTCGTGTTGGGCGGCATAGCTGGTAAGAACAGCAAGGCAGAGTTTCAAGCTCCATGCCGTACCACAAAGTATCCCCGGGAGATTCCACCATTACCATGGTACAGGAGGACCGTTCCTCAAATGGCAATGGCAGGCTTTTTGCCATTTAGTGCCATTTATATTGAGCTATATTACATTTTTGCAAGTATCTGGGGTCACAAGATTTATACAATATATAGCATTCTCTTCATTGTATTCATCATCCTCATCATTGTTACCTCGTTTATTACAATTGCATTAACATACTTTCAGCTTGCAGCAGAGGATCATGAATGGTGGTGGAGGTCTGTTTTATGTGGAGGATCAACTGGTTTGTTCGTGTTTGGATACTGTTTCTATTATTACTTTGCACGATCTGATATGACTGGCTTCATGCAAGTGTCATTCTTCTTTGGATACATGGCTTGCATATGTTATGGCTTCTTCCTAATGCTGGGAACAGTTGGATTCCAGTCTTCTTTACTGTTTGTTCGCCATATATACCGTTCCATTAAGTGTGAGTAA___AACTCTTCCAGTGCAGAGCACGCAGATTTTGGTCTATCTGTCCATCCTGTAGATTAGTTGCAGATTATAATGGTCCTGGCTAGCATACTCCTTTGGACATGCTTGTCCAAAATGGAGTTGGGCGGTAAGCTCTTACCGTTAGGTGAATGCTTACATGTGGTAAGTTTCTAGGAAATAAGGTGAATAATGACACTGGCAGATTAGGCTGAGGTGAACAATTGAAGAACTAGTATATAGTTATGTTGATGAATAGTTACGGAGGCATGTTTTATCTCGAACAGCTTTGTTTGGTGATACCTATTGTCAGGCATAAGCCAATTTTTTAGGTCTCAAATCTATGGAGTAAGATGAATAAGCATCGAGCAAGCTTCAGGGATCTTCAAATGTTACCTTTCTGTTGGCCTGTATTTTATATTCCTGGTC

Fln Alignment:

Contig809___SDHSYKVGDEVPLYVNKVGPFQNPSETYRYFDLPFCPPDHVTEKKEALGEVLNGDRMVDARYRLKFRVDKETNSLCKKKLSKEDLAKFRDAVKNDYYFQMYYDDLPIWGFVGKVENENKGDEKKPRHLLYRHVHFDVLYNDDRVIEISVHTDPQYAVDITEDKEIEVEFMYSVKWKKTDILFERRMDKYAKSSFLPQHLEIHWFSIINSCVTVLLLTGFLATILMRILKNDFIKYSRDEESMDDQEETGWKYIHGDVFRYPSHKSLFSAVLGSGTQLLVLTIFIFVLALVGVFYPYNRGALYTALVVIYALTSGIAGYVAASFYGQLEGRNWVRNLLLTGCLFCGPLFLTFSFLNTVAIAYNATAALPFGXXXXXXXXXXXXXFPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRRTVPQMAMAGFLPFSAIYIELYYIFASIWGHKIYTIYXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSVLCGGSTGLFVFGYCFYYYFARSDMTGFMQVSFFFGYMACICYGFFLMLGTVGFQSSLLFVRHIYRSIKCE
B8LKM1________________SDHKYSKGDHVPLYANKVGPFQNPSETYRYFDLPFCQPEHMTEKREDLGEVLNGDRMVDAQYKLDFNVDKESEVLCKKKFKAEDVAKFREAVKNSYYFQMYYDDLPLWGFIGKVEKESKIDQK---YSLFTHLHFDIKFNKDRVIEISVRTDPSFTVDITEDKEVEIEFVYSVKWAETDVPFKRRMDVYSKSSSLPQHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFIKYSHDEETADEQEETGWKYIHGDVFRYPPHKSLFSAVLGSGTQLLALAIFIFMLALVGVFYPYNRGALYTALVVIYALTSGIAGYTAASFYRQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGTILVILLIWTLVTSPLLVLGGIAGKNSRAEFQAPCRTTKYPREIPPLPWYRGTVPQMAMAGFLPFSAIYIELYYIFASLWGHKIYTIYSILFIVFIILIIVTAFITIALTYFQLAVEDHQWWWRSVLCGGSTGVFIFGYCVYYYFARSDMTGFMQTSFFFGYMTCICYGFFLMLGTVGFRASLLFVRHIYRSIKCE

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
129	33	66			0.997452
132			33	66	0.997452
133		66		33	0.997452
257	25	75			0.996473
260	75		25		0.996473
268	20		80		0.995493
269	20	80			0.995493
271			20	80	0.995493
399	20	80			0.995493
458		25		75	0.996473
525	83			16	0.994512
542	12			87	0.992554
543	12	87			0.992554
545	87		12		0.992554
546			87	12	0.992554
582	12			87	0.992554
594	12			87	0.992554
665		16		83	0.994512
902	10	90			0.90298
904		90		10	0.90298
936	11	88			0.923564
938			88	11	0.923564
950			85	14	0.993533
962	14	85			0.993533
1058		14		85	0.993533
1059	14		85		0.993533
1092	18			81	0.999994
1093	18	81			0.999994
1163	10			90	0.90298
1164	10		90		0.90298
1166			10	90	0.90298
1639	10		90		0.90298
1640		10	90		0.90298
1641	10		90		0.90298
1642			90	10	0.90298
1646		90	10		0.90298
1647	90			10	0.90298
1675	11			88	0.923564
1682	50	50			1.0
1691		87		12	0.992554
1739		20	80		0.995493
1740	20	80			0.995493
1774	33	66			0.997452
2230	14			85	0.993533
2250	28		71		1.0
2251	71		14		0.984337
2257			85	14	0.993533
2313		33		66	0.997452
2314	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain