SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene777

Length: 552 nt

UniGene Fasta

>biog3_v1.0_unigene777
AAAGGTCTAAGTAGAGGAGCAATTGTAGCCATTGCCATTGGAGATGTGGCAGGTATTATTTTGATAAGTTTGATCTTTCTATATTGTTACTGGAGAGCCCTCGGATGTCAAGACAAAGATTCTGCAAACGAGGAGTCAACGAGTGGAGGGAGAGGAAGAGGTTGGCTTTGCCTTAGAAGGAAGGATGACTCTGAAGTCTATTCCGAGAATATGGAACAGGCAGATCTTGTAGCTTTGGATGGGCAGGTAAGTTATGATCTTGACGAGCTTCTGAGGGCCTCTGCTTTTGTCCTGGGAAAGAGTGGTGTTGGCATCGTATACAAAGTGGTGTTAGAAGACGGGCTCACATTGGCTGTTAGGAGGCTTGGGGAAGGAGGTTCTCAGAGATTCAAAGAGTTTCAAGCAGAAGTGGAAGCTATAGGTCGAATTCGGCACTGCAACATAGTTACTCTTAGAGCCTATTACTGGTCTGTAGATGAGAAACTGCTGATCTATGACTACATCCCTAATGGCAGTTTAGCTGCTGCATTGCATGGGAAAGCAGCAACTTCT

Ace file of the UniGene biog3_v1.0_unigene777

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3467	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJW4_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	probable inactive leucine-rich repeat receptor-like protein kinase at1g66830-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	72%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Asparaginase/glutaminase	IPR006034	-	-
Sma3	Tumour necrosis factor	IPR006052	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF1242	IPR009653	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 114 - 340

Fln protein: MEQADLVALDGQVSYDLDELLRASAFVLGKSGVGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQAEVEAIGRIRHCNIVTLRAYYWSVDEKLLIYDYIPNGSLAAALHGKAATS

Protein Length: 115

Fln nts: AAAGGTCTAAGTAGAGGAGCAATTGTAGCCATTGCCATTGGAGATGTGGCAGGTATTATTTTGATAAGTTTGATCTTTCTATATTGTTACTGGAGAGCCCTCGGATGTCAAGACAAAGATTCTGCAAACGAGGAGTCAACGAGTGGAGGGAGAGGAAGAGGTTGGCTTTGCCTTAGAAGGAAGGATGACTCTGAAGTCTATTCCGAGAAT_-_ATGGAACAGGCAGATCTTGTAGCTTTGGATGGGCAGGTAAGTTATGATCTTGACGAGCTTCTGAGGGCCTCTGCTTTTGTCCTGGGAAAGAGTGGTGTTGGCATCGTATACAAAGTGGTGTTAGAAGACGGGCTCACATTGGCTGTTAGGAGGCTTGGGGAAGGAGGTTCTCAGAGATTCAAAGAGTTTCAAGCAGAAGTGGAAGCTATAGGTCGAATTCGGCACTGCAACATAGTTACTCTTAGAGCCTATTACTGGTCTGTAGATGAGAAACTGCTGATCTATGACTACATCCCTAATGGCAGTTTAGCTGCTGCATTGCATGGGAAAGCAGCAACTTCT

Fln Alignment:

Contig777___SENMEQADLVALDG-QVSYDLDELLRASAFVLGKSGVGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQAEVEAIGRIRHCNIVTLRAYYWSVDEKLLIYDYIPNGSLAAALHG
B8LN40________________AQEAERNKLVFFEGSQYTFDLEDLLRASAEVLGKGSVGTAYKAVLEDGTTVVVKRLKDVAANR-KDFEQQMELVGRIRHRNLVPLRAFYYSKDEKLLVYDYMPTGSLSALLHG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
221	33	66			0.997452
223			66	33	0.997452
224	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain