SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene766

Length: 759 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene766

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2869	6/11
SustainPine v2.0	sp_v2.0_unigene19498	5/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 5-3 exoribonuclease [Oryza sativa Japonica Group]	-	-	0.0	64%
FL-Next	Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3	-	-	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR015706	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
344	25			75	0.996473
345		25		75	0.996473
407	33			66	0.997452
458	33		33	33	0.997753
459	33	33		33	0.997753
461	33		66		0.997452
462	66			33	0.997452
482	33		66		1.0
492	33	66			1.0
494		33		66	1.0
495	33		66		1.0
515	25		75		0.996473
516			75	25	0.996473
520	75		25		0.996473
533		25		75	0.996473
545			25	75	0.996473
548	25		75		0.996473
558	20		80		0.995493
559	20	80			0.995493
560		80		20	0.995493
561	80		20		0.995493
562		80		20	0.995493
567			20	80	0.995493
587		66		33	1.0
596		83		16	0.994512
599	16		83		0.994512
605		16		83	0.994512
635	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain