SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene764

Length: 1246 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene764 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15926	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj\|BAD15406.1\| KH domain-containing protein-like [Oryza sativa Japonica Group] gb\|EAY84850.1\| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb\|EAZ22072.1\| hypothetica	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	zinc finger ccch domain-containing protein 14-like	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN83

Fln msg:

Fln protein: MDPFGHARKKARSETFLNENGGLFNPHESNMFGDGNRFKAGGMKFALQPEKESLPTGLGSKSKACTKFFSLSGCPYGEGCHFQHYVPGGVNPVTQIGTLGTALGAASKKPTGLLAAEPTLNASNYKTRLCSNFGTDTGCRFGDKCHFAHGEKELGKVNAVAHNLKDDLATGPFGSRFPVGGLDGKLGGRPGYREATSPGMAAAATFGASATAKISVDAALAGAIIGKGGVNSKQICRSTGAKLAIRDHESDTNLKNIELEGSFDQIKEASALVRQLIMHTSATLPAKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDNSK*

Protein Length: 331

Fln nts: CGTCGCGGAATGACTATTGGGTTGGAGATATCGAGCTTAGACAAGGGTTCTGAGAAGGTTTATTGTTTAGTTTGGTCGTATCATATAGGAGGGTTTAGCTCGAAGATCTC_-_ATGGACCCATTTGGGCACGCCCGCAAGAAGGCGAGGTCCGAGACATTTTTGAACGAAAATGGTGGTCTGTTCAATCCCCATGAGAGTAACATGTTCGGGGATGGCAACAGATTCAAGGCCGGTGGTATGAAATTCGCTTTACAGCCAGAAAAGGAGTCGTTACCAACAGGTTTAGGAAGCAAATCAAAGGCATGCACCAAGTTTTTCAGTCTTTCTGGATGCCCTTATGGAGAAGGCTGCCATTTCCAGCATTATGTTCCAGGTGGAGTGAATCCTGTTACTCAGATTGGAACTTTGGGGACTGCATTGGGTGCAGCTTCAAAGAAACCTACTGGGCTTTTGGCAGCAGAGCCAACATTAAATGCATCAAATTACAAGACACGCCTTTGTAGTAATTTTGGTACTGATACTGGATGTCGATTTGGGGACAAGTGCCATTTTGCCCATGGTGAAAAGGAGCTTGGGAAGGTAAATGCAGTGGCACACAATCTCAAAGATGATCTGGCAACAGGACCTTTTGGCAGTAGGTTCCCAGTTGGTGGCTTAGATGGAAAGCTTGGAGGTCGTCCTGGTTATCGTGAGGCTACTTCTCCTGGTATGGCAGCTGCAGCTACATTTGGTGCTTCAGCAACTGCAAAAATAAGTGTTGATGCTGCACTTGCTGGTGCAATAATTGGGAAAGGTGGTGTAAACTCTAAGCAAATTTGTCGTTCAACTGGTGCAAAATTGGCTATAAGAGATCATGAGTCCGATACTAATCTGAAGAATATTGAGTTGGAAGGTAGTTTTGATCAGATAAAGGAAGCTAGTGCCTTGGTTCGTCAGCTGATCATGCACACGAGTGCTACACTGCCTGCAAAGCAGCCTTCATTTACTACAAACAACTTCAAAACCAAGCTCTGTGAAAACTATGCACAAGGCACATGTACATTTGGGGATCGTTGCCACTTTGCGCATGGTGCCAGTGAGTTGCGAGACAACTCTAAATAA___TTCTGATTTTCTCTATACTCTTCATTTATGGGTATATTCTAGAAAGGTACTGTATCACAAGTTTTGAACCAGGGATTGTAGATGGTGAGGATTAGTAGTTGTTGCATGTTTATTTTACTGCTTTGGGCTTGCTTGAACTTGGGCAT

Fln Alignment:

Contig764___MDPFGHARKKARSETFLNENGGLFNPHESNMFGDGNRFKAGGMKFALQPEKESLPTGLGSKSKACTKFFSLSGCPYGEGCHFQHYVPGGVNPVTQIGTLGTALGAASKKPTGLLAAEPTLNASNYKTRLCSNFGTDTGCRFGDKCHFAHGEKELGKVNAVAHNLKDDLATGPFGSRFPVXXXXXXXXXXXGYREATSPGMXXXXXXXXXXXAKISVDXXXXXXXXXXXGVNSKQICRSTGAKLAIRDHESDTNLKNIELEGSFDQIKEASALVRQLIMHTSATLP-AKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDN
B8LN83________________MDPFGHARKKARSDAFLNENGGRFNPQESTMFGDGNRFKSGGLTFGSLPEKESLPTGLGSKSKACTKFFSTSGCPYGEGCHFQHHVQGGVNPVTQIPSLGSALGAASKKPVGVLPAEPTLNASNYKTRLCSNYNTGEGCRFGDKCHFAHGEKELAKVNAPAHNLKDDWATGPFGSRFPVGGLDGKPVGRPGYREATPPGMAAAATFGASATAKISVDAALAGPIIGKGGINSKHISRATGAKLAIRDHESDTNLKNIELEGSFDQIKEASAMVRQLIMHTSAVLPAAKQPSFTTNNFKTKLCENYAQGTCTFGDRCHFAHGASELRDN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
953		14	85		0.993533
1208	33	66			1.0
1209		33		66	1.0
1211	66			33	1.0
1212			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain