SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene750

Length: 456 nt

UniGene Fasta

>biog3_v1.0_unigene750
GTGCAAGTAGCTCTCGATCGTGTCATGGTTGGTCGGACAACCGTAGTAGTTGCTCATCGCTTATCCACTATAATAAACGCAGACATTATAGCTGTAATTCAAAATGGTAAAATTGTGGAAAGTGGTGATCATAAAACGCTGATGTCCAAAGAGGGAGGAGCATATGCAAGCCTTGTCAAGTTGCAGGAATCGAGTAAAGAGGTTGCAGAGGGTTCGGCCCTCTCTCGTCAGAAAAGTGCGGTCGTTTCACGAGGTGGTGGTGGCTCTATCTCGCAAAGAGGTGGTGGTGGCTCTATCTCGCGAACATTCAGTTTCGCAGCATCAGACAAGGAGTCATCATTGGGAGCATTTTCCAGGCCTTTTGGTTCAGAGACGAACGAGATTGCCAAAACTGAGAGAGTTCCTTTTAGTCGATTGGTCAAAATGGCTGCCCCAGACTGGATGCGCGCTGTCCTT

Ace file of the UniGene biog3_v1.0_unigene750

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene175	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	MDR-like ABC transporter n=1 Tax=Ginkgo biloba RepID=E6Y0T2_GINBI	-	-	77%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	56%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	78%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: STOP codon was not found. Distance to subject end: 87 aas, your sequence is shorter than subject: 152 - 1316

Fln protein: VQVALDRVMVGRTTVVVAHRLSTIINADIIAVIQNGKIVESGDHKTLMSKEGGAYASLVKLQESSKEVAEGSALSRQKSAVVSRGGGGSISQRGGGGSISRTFSFAASDKESSLGAFSRPFGSETNEIAKTERVPFSRLVKMAAPDWMRAVL

Protein Length: 153

Fln nts: GTGCAAGTAGCTCTCGATCGTGTCATGGTTGGTCGGACAACCGTAGTAGTTGCTCATCGCTTATCCACTATAATAAACGCAGACATTATAGCTGTAATTCAAAATGGTAAAATTGTGGAAAGTGGTGATCATAAAACGCTGATGTCCAAAGAGGGAGGAGCATATGCAAGCCTTGTCAAGTTGCAGGAATCGAGTAAAGAGGTTGCAGAGGGTTCGGCCCTCTCTCGTCAGAAAAGTGCGGTCGTTTCACGAGGTGGTGGTGGCTCTATCTCGCAAAGAGGTGGTGGTGGCTCTATCTCGCGAACATTCAGTTTCGCAGCATCAGACAAGGAGTCATCATTGGGAGCATTTTCCAGGCCTTTTGGTTCAGAGACGAACGAGATTGCCAAAACTGAGAGAGTTCCTTTTAGTCGATTGGTCAAAATGGCTGCCCCAGACTGGATGCGCGCTGTCCTT

Fln Alignment:

Contig750___VQVALDRVMVGRTTVVVAHRLSTIINADIIAVIQNGKIVESGDHKTLMSKEGGAYASLVKLQESSKEVAEGS
E6Y0T0________________VQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQESNRSKEQDS

SNPs (tot: 5)

Position	A %	G %	T %	Probability
231	25	75		0.996473
232	75		25	0.996473
233	75	25		0.996473
234	75		25	0.996473
352	33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain