SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene729

Length: 603 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene729 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6705	7/8
SustainPine v2.0	sp_v2.0_unigene35678	1/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Poly [ADP-ribose] polymerase 1 [Arabidopsis thaliana] sp\|Q9ZP54.2\|PARP1_ARATH RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase 1 emb\|CAA10482.	-	-	7.00005e-41	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	poly	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	61%
Blast2go	response to stress	GO:0006950	Biological Process	61%
Blast2go	response to chemical stimulus	GO:0042221	Biological Process	61%
Blast2go	primary metabolic process	GO:0044238	Biological Process	61%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	61%
Blast2go	DNA binding	GO:0003677	Molecular Function	61%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	Zinc finger, PARP-type	IPR001510	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	NAD+ ADP-ribosyltransferase	IPR008288	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3	PADR1	IPR012982	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
482	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain