SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene721

Length: 1043 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene721

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25740	8/11
SustainPine v2.0	sp_v2.0_unigene35370	3/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor 1 [Arabidopsis thaliana] ref\|NP_851169.1\| splicing factor 1 [Arabidopsis thaliana] ref\|NP_001032055.1\| splicing factor 1 [Arabidopsis thaliana] dbj\|BAA97393.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN13087.1\| unknown protein [	-	-	7.0e-22	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	splicing factor 1	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
187		66		33	0.997452
211		66		33	0.997452
212			33	66	0.997452
223	33		66		0.997452
234		33	66		0.997452
241	33		66		0.997452
249			33	66	0.997452
256			33	66	0.997452
437	25			75	0.996473
443	75		25		0.996473
487	33		66		0.997452
604	33			66	0.997452
627	40	60			1.0
631	60			40	1.0
675	16		83		0.994512
698	83		16		0.994512
736	80	20			0.995493
747	80		20		0.995493
749	80		20		0.995493
762		80		20	0.995493
793		20		80	0.995493
810	80		20		0.995493
813	25			75	0.996473
815		25		75	0.996473
849	33			66	0.997452
850		33		66	0.997452
851	33	66			0.997452
853			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain