SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene700

Length: 477 nt

UniGene Fasta

>biog3_v1.0_unigene700
AATGTTGAAACTGTACGGGCGATCGTGGCGTCACATTGAAGAACACATTGGTACGAAAAATGCTGTTCAGATTCGCAGCCATGCCCAGAAATTCTTCACAAAGTTGGAGAAAGGGGCTTCATCAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGCTATTGACAGAGGAGGTGACGCTTCAATTGCCGAAGAGGACTCTCGAACCAGGGGTTGTGAAGAATCGTATTCATCTGCAGCAAATCTTCACGGTAAAAGGGAATGTTCCAAGGTCACAGAACTTGCGCAGGATAATTCAGAAAGCAGGCCACTTTATAAGCCCAAAATGATACAGGGAACATCGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTCGGTCAAACTCTTGTTGTTCAAAACTCATTTACAGATGA

Ace file of the UniGene biog3_v1.0_unigene700

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12004	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LHY homologue1 [Lemna paucicostata]	-	-	2.0e-11	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	late elongated hypocotyl-like protein	-	-	0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	89%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW27

Fln msg: Distance to subject end: 269 aas, your sequence is shorter than subject: 158 - 467

Fln protein: MLKLYGRSWRHIEEHIGTKNAVQIRSHAQKFFTKLEKGASSGTNSTMTDQYLEIPPPRPKRKPGHPYPKKTGAIDRGGDASIAEEDSRTRGCEESYSSAANLHGKRECSKVTELAQDNSESRPLYKPKMIQGTSQPSRMSTSLKLFGQTLVVQNSFTD

Protein Length: 159

Fln nts: AATGTTGAAACTGTACGGGCGATCGTGGCGTCACATTGAAGAACACATTGGTACGAAAAATGCTGTTCAGATTCGCAGCCATGCCCAGAAATTCTTCACAAAGTTGGAGAAAGGGGCTTCATCAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGCTATTGACAGAGGAGGTGACGCTTCAATTGCCGAAGAGGACTCTCGAACCAGGGGTTGTGAAGAATCGTATTCATCTGCAGCAAATCTTCACGGTAAAAGGGAATGTTCCAAGGTCACAGAACTTGCGCAGGATAATTCAGAAAGCAGGCCACTTTATAAGCCCAAAATGATACAGGGAACATCGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTCGGTCAAACTCTTGTTGTTCAAAACTCATTTACAGATGA

Fln Alignment:

Contig700___LKLYGRSWRHIEEHIGTKNAVQIRSHAQKFFTKLEKGASSGTNSTMTDQYLEIXXXXXXXXXXXXXXXXTGAIDRGGDASIAEEDSRTRGCEESYSSAANLHGKRECSKVTELAQDNSESRPLYKPKMIQGTSQPSRMSTSLKLFGQTLVVQNSFTD
A9NW27________________LKLYGRSWRHIEEHIGTKSAVQIRSHAQKFFTKLEKGASTGTSSTMTYQYLEIPPPRPKRKPGHPYPKKTGVIDRGGDFSILEEDSRTRGCEVS---------ERECSKLTELAQHNSKSMSLDKPKMTQGTSQPSRMSTSLKLFGQTLVVQNSFTD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain