SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene671

Length: 958 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene671

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15805	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	beta- -glucanase	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTI6

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 319 - 344

Fln protein: NVIFCCSILAEGAQIGVNYGMLGTSLPPAGQVVTLMKSNNIGKMKIFQADRDALKAFANSGIEVIVGVGNSELQLISSSQDAANGWVNDNIRPFYPATNIKYIAVGNEVLTGTTYGSYLVPAMRNIQTALQNANLQNNIKVSTTHSSDVSKGYPPSNGVFKDEFKDTMKSVLQFLSNHGSPFMGNIYPYFSYINNRASISLDYALFKSTSTVVTDKGRNYKYLFDALVDTLVSAMEALGYPNIPLIVTESGWPSAEADVATVDNARTYNNNLIRHVLSNQGTPKRPGTSIETYIFALFNENEKSAGTEQHFGLFYPNQQ

Protein Length: 320

Fln nts: A_-_ATGTCATCTTCTGTTGTTCAATCCTCGCAGAAGGTGCTCAAATAGGAGTGAACTACGGCATGTTGGGAACCAGTCTGCCACCTGCAGGCCAGGTGGTAACTTTGATGAAGAGCAATAACATCGGGAAAATGAAGATTTTCCAAGCGGACAGAGACGCTCTGAAAGCTTTTGCCAATTCGGGGATCGAGGTTATTGTGGGAGTCGGCAACAGCGAATTGCAGCTCATCTCCTCCAGCCAGGACGCCGCGAATGGTTGGGTCAACGACAACATTCGCCCCTTCTATCCCGCCACCAATATCAAGTATATTGCAGTGGGCAACGAGGTTTTGACAGGAACGACGTACGGATCGTATCTTGTTCCTGCCATGAGGAACATTCAAACCGCGCTGCAGAACGCCAATCTGCAGAATAATATCAAGGTCTCTACCACTCACTCCTCCGATGTTAGCAAGGGCTACCCGCCGTCTAACGGTGTCTTCAAAGACGAGTTCAAGGACACCATGAAGTCCGTGCTTCAATTCCTGTCAAATCACGGGTCTCCCTTCATGGGCAACATCTATCCATACTTCAGCTACATCAACAACAGAGCCTCCATATCTCTGGACTACGCTCTGTTCAAGTCCACGTCTACAGTGGTGACAGACAAGGGTCGGAATTACAAATACTTGTTCGATGCCTTGGTCGATACTCTTGTTTCGGCCATGGAAGCCTTGGGTTATCCCAACATCCCACTGATCGTTACTGAAAGCGGATGGCCTTCTGCTGAGGCGGACGTGGCCACAGTTGACAATGCTCGTACTTATAATAACAATCTCATCCGCCATGTGTTGTCGAATCAAGGGACACCGAAGAGGCCGGGGACGAGCATTGAGACCTATATCTTCGCTCTCTTCAACGAGAACGAAAAGAGCGCCGGAACGGAGCAGCACTTTGGGCTCTTCTACCCTAATCAACAGC

Fln Alignment:

Contig671___IFCCSILAEGAQIGVNYGMLGTSLPPAGQVVTLMKSNNIGKMKIFQADRDALKAFANSGIEVIVGVGNSELQLISSSQDAANGWVNDNIRPFYPATNIKYIAVGNEVLTGTTYGSYLVPAMRXXXXXXXXXXXXXXXKVSTTHSSDVSKGYPPSNGVFKDEFKDTMKSVLQFLSNHGSPFMGNIYPYFSYINNRASISLDYALFKSTSTVVTDKGRNYKYLFDALVDTLVSAMEALGYPNIPLIVTESGWPSAEADVATVDNARTYNNNLIRHVLSNQGTPKRPGTSIETYIFALFNENEKSAG-TEQHFGLFYPNQ
A9NTI6________________IFCCSIFTDGDKIGVNYGMLGDNLPPADQVVTLINNNNIGKTRIFAANRDALNAFANSGIDVIVGVGNEELEAISSSQDSANGWVNNNIVPFYPATNIKYIAVGNEVLPSTQYVSYLFPAMTNIQTAVQNANLQNNIKVSTTHVMGVTNGFPPSQGVFGDDVKDTMNSILKFLSDNGAPYMANVYPYFSYTGSGGSITLDYALFKSTSTVVTDNGRSYTNLFDAMVDTVISAMENLGYPNVPIVITESGWPSAGADAATVENAQSYNNNLIQHILSNAGTPKRSGTSIETYIFALFNENTKTGDEIERHFGLFNADQ

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
636		18	81		0.999994
637	18		81		0.999994
639			81	18	0.999994
717	20			80	0.995493
748	85			14	0.993533
750		85		14	0.993533
774		71		28	1.0
807		20		80	0.995493
828		20	80		0.995493
831	20		80		0.995493
838		75	25		0.996473
849	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain