SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene635

Length: 448 nt

UniGene Fasta

>biog3_v1.0_unigene635
GGACACCAGGAGATCCCGATATGGGAAAGTGTTCAAAACCCACTTGTTTGGAAAGCCCACAATCTTCTCCACAGATCCAGAAGTGAACAAATTCATACTGCAAAACGTAAGGGAAGCTGTTTGCAACCAGCTATCCAAGCTCTATTGCCAATCTACTTGGAAAGGATTCTTTGCTCCTGATGCAAGGAAACCTGCATAAACGGTTGCATTCTCTCACACTGAGCTTTGCAAATTCGTCTGTTCTCAAAGACCATCTTATGTTCGACATTGAGAAGCTTGTCTGTTTAACTCTAGATGGCTGGAAAGATCACGTTCTTCTTCAAGATGAAGCAAAAAAGATAACCTTTGAATTGACAGTGAAGCAGCTATTGAGCTTTGATCCTGGTCAATGGTCTGAGAATCTGAGGAAAGAGTACTTGCAGAAGAGCTGAGACTGATTGTACACATT

Ace file of the UniGene biog3_v1.0_unigene635

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2425	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 90A20 n=1 Tax=Picea sitchensis RepID=A9NWM7_PICSI	-	-	88%
FL-Next	tr=Cytochrome P450 90A20; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	cytochrome p450 90a1	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid biosynthetic process	GO:0016132	Biological Process	79%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	response to UV-B	GO:0010224	Biological Process	79%
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	79%
Blast2go	pollen exine formation	GO:0010584	Biological Process	79%
Blast2go	tapetal cell differentiation	GO:0048657	Biological Process	79%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	79%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	79%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	79%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	79%
Blast2go	oxygen binding	GO:0019825	Molecular Function	79%
Blast2go	heme binding	GO:0020037	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM7

Fln msg: Separated hits, possible frame ERROR between 106 and 111, Unexpected STOP codon at 3' end. Distance to subject end: 269 aas, your sequence is shorter than subject: 144 - 487

Fln protein: DTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQxxxGKLFATSYPSSIANLLGKDSLLLMQGNLHKRLHSLTLSFANSSVLKDHLMFDIEKLVCLTLDGWKDHVLLQDEAKKITFELTVKQLLSFDPGQWSENLRKEYLQKS*

Protein Length: 145

Fln nts: GGACACCAGGAGATCCCGATATGGGAAAGTGTTCAAAACCCACTTGTTTGGAAAGCCCACAATCTTCTCCACAGATCCAGAAGTGAACAAATTCATACTGCAAAAxxxxxxAGGGAAGCTGTTTGCAACCAGCTATCCAAGCTCTATTGCCAATCTACTTGGAAAGGATTCTTTGCTCCTGATGCAAGGAAACCTGCATAAACGGTTGCATTCTCTCACACTGAGCTTTGCAAATTCGTCTGTTCTCAAAGACCATCTTATGTTCGACATTGAGAAGCTTGTCTGTTTAACTCTAGATGGCTGGAAAGATCACGTTCTTCTTCAAGATGAAGCAAAAAAGATAACCTTTGAATTGACAGTGAAGCAGCTATTGAGCTTTGATCCTGGTCAATGGTCTGAGAATCTGAGGAAAGAGTACTTGCAGAAGAGCTGAGACTGATTGTACACATT

Fln Alignment:

Contig635___DTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQNxxGKLFATSYPSSIANLLGKDSLLLMQGNLHKRLHSLTLSFANSSVLKDHLMFDIEKLVCLTLDGWKDHVLLQDEAKKITFELTVKQLLSFDPGQWSENLRKEYLQ
A9NWM7________________DTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQNxxGKLFATSYPSSITNLLGKHSLLLIQGNLHKRLHSLTLSFANSSVLKDHLMFDIEKLVCLTLDGWKDHVLLQDEAKKITFELTVKQLLSFDPGQWSENLRKEYLQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
204		66		33	0.997452
206	25		50	25	0.995533
207	25			75	0.996473
210		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain