SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene619

Length: 1173 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene619 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9911	16/17

Source	Descriptions	Term	Type	Identity
AutoFact	sucrose-phosphatase 1 [Ginkgo biloba]	-	-	48%
FL-Next	tr=Sucrose-phosphatase; Pinus taeda (Loblolly pine).	-	-	51%
Blast2go	sucrose-phosphatase 2	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric monoester hydrolases.	EC:3.1.3.-	-	0.0	64%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	64%
Blast2go	Ascorbate and aldarate metabolism	00053	64%
Blast2go	Lipopolysaccharide biosynthesis	00540	64%
Blast2go	Ether lipid metabolism	00565	64%
Blast2go	Sphingolipid metabolism	00600	64%
Blast2go	Thiamine metabolism	00730	64%
Blast2go	Riboflavin metabolism	00740	64%
Blast2go	Nicotinate and nicotinamide metabolism	00760	64%
Blast2go	Metabolic pathways	01100	64%
Blast2go	Biosynthesis of secondary metabolites	01110	64%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	64%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	64%
Blast2go	phosphatase activity	GO:0016791	Molecular Function	64%
Blast2go	cytoplasm	GO:0005737	Cellular Component	64%
Blast2go	nucleus	GO:0005634	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Sucrose-phosphate phosphatase	IPR006378	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3	Sucrose phosphatase, plant/cyanobacteria	IPR012847	-	-
Sma3	Sucrose-6-phosphate phosphohydrolase C-terminal	IPR013679	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q850K9

Fln msg: Separated hits, possible frame ERROR between 633 and 1064, your sequence is shorter than subject: 373 - 425

Fln protein: NVVPLLTPAIVVSSVGTEILYGKSLEPDPSWIKLLDEGWDRDVVFEETKTFPQLRLQEESEQRPHKVSFYLDKQDAPRVQEELFSRLKQRGIDVKLIFSGGTAFDVLPKMGGKGEALGYLMRKMKKEGCLSKNVLVCGDSGNDTELFLVEGVNGVIVSNAQEELIQWYRSHNFVNNIHHASERCAGGIIQALEHYDFGPYNPPRKTIKEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPNGVQWLRVHETSRNDE*

Protein Length: 374

Fln nts: AATGTAGTCCCATTGCTGACACCTGCAATAGTTGTTTCATCAGTTGGGACAGAGATTTTGTATGGGAAGTCCCTGGAGCCTGATCCTTCCTGGATCAAGTTACTAGACGAAGGGTGGGATCGAGATGTTGTCTTCGAGGAAACCAAAACGTTTCCTCAACTGAGGTTGCAGGAGGAGTCAGAGCAACGTCCCCACAAAGTCAGCTTTTATTTGGACAAGCAAGATGCGCCAAGAGTTCAAGAAGAACTATTTTCTAGATTGAAACAGCGGGGGATTGATGTGAAGTTAATTTTTAGTGGTGGTACGGCCTTCGATGTGCTTCCCAAAATGGGTGGAAAAGGAGAAGCCCTTGGCTACCTAATGAGAAAAATGAAGAAAGAGGGGTGCCTATCCAAGAATGTCCTTGTTTGTGGAGACTCGGGCAATGATACAGAATTATTCTTGGTTGAAGGAGTGAATGGAGTCATTGTCTCTAATGCTCAGGAGGAGCTGATCCAATGGTACAGGTCCCATAATTTTGTGAATAACATCCACCATGCAAGTGAAAGATGTGCTGGTGGGATCATTCAGGCTCTAGAACATTATGATTTTGGACCATACAATCCACCACGCAAGACAATAAAGGAAGCTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACCAAATGGAGTACAGTGGCTAAGGGTTCATGAAACATCCAGAAATGATGAGTAACAAGTTAAATTCATCATTTGATGTCACCTTCATGTTGCTTCCTCCAGCCTGGAACA

Fln Alignment:

Contig619___PLLTPAIVVSSVGTEILYGKSLEPDPSWIKLLDEGWDRDVVFEETKTFPQLRLQEESEQRPHKVSFYLDKQDAPRVQEELFSRLKQRGIDVKLIFSGGTAFDVLPKMGGKGEALGYLMRKMKKEGCLSKNVLVCGDSGNDTELFLVEGVNGVIVSNAQEELIQWYRSHNFVN-NIHHASERCAGGIIQALEHYDFGPYNPPRKTIKEAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPNGVQWLRVHET
Q850K9________________PLLTPEITIMSVGTEITYGDSMSPDKGWEEVLNQGWDRGTVVKEASRFPQLKFQVETEQRPHKVSFYIEKTKSSEVINALSKRLEEHQLDVKIIYSGGIDLDILPQGAGKGQALAYLLKKFNSKGKSPQNTLVCGDSGNDAELFSVADVYGVMVGNAQEELLQWYEGNAKSNPKVILAHERCAAGIIQAMQHFNLDPNVSPRDIVGLSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPNSLSWIHIHET

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
207	33			66	0.997452
208	33	66			0.997452
210		66	33		0.997452
211		66		33	0.997452
212	33		66		0.997452
213	33	66			0.997452
256	20	80			0.995493
259		80	20		0.995493
302	80			20	0.995493
970	87	12			0.992554
972	62	12		12	0.962769
973	12		75	12	0.975346
974		85		14	0.993533
1034	25		75		0.996473
1035		25		75	0.996473
1118		33	66		0.997452
1120	66			33	0.997452
1121	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain