SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene612

Length: 337 nt

UniGene Fasta

>biog3_v1.0_unigene612
TGAAGAATAAAGTTGTAGAGAGCGTGAAGGAGAAGGATGATGTCAAATACAAGGTAGAACAGAATGCTAGTGCAAAGACTAGTGAAGGCAGTCCAAAGCAAACAAAGGATAATATCCAAAATTCTGAACCGCCTAAAGAAGACTATATCCATGTCAGAGCAAGGCGAGGCCAAGCCACTAATAGTCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAAATTAGTGAACGGATGAAGTTTCTGCAAGATCTTGTTCCTGGATGTAGTAAGGTCACTGGGAAAGCCGTGATGCTTGATGAAATATAAACTATGTACAGTCATTACAACGGCAAGTTGAG

Ace file of the UniGene biog3_v1.0_unigene612

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1862	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative bHLH transcription factor [Arabidopsis thaliana]	-	-	3.0e-39	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	transcription factor bhlh62-like	-	-	0.0	52%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	52%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	52%
Blast2go	DNA binding	GO:0003677	Molecular Function	52%
Blast2go	chloroplast	GO:0009507	Cellular Component	52%
Blast2go	nucleus	GO:0005634	Cellular Component	52%

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3		IPR001092	-	-
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 140 aas, your sequence is shorter than subject: 101 - 605

Fln protein: KNKVVESVKEKDDVKYKVEQNASAKTSEGSPKQTKDNIQNSEPPKEDYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEI*

Protein Length: 102

Fln nts: TGAAGAATAAAGTTGTAGAGAGCGTGAAGGAGAAGGATGATGTCAAATACAAGGTAGAACAGAATGCTAGTGCAAAGACTAGTGAAGGCAGTCCAAAGCAAACAAAGGATAATATCCAAAATTCTGAACCGCCTAAAGAAGACTATATCCATGTCAGAGCAAGGCGAGGCCAAGCCACTAATAGTCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAAATTAGTGAACGGATGAAGTTTCTGCAAGATCTTGTTCCTGGATGTAGTAAGGTCACTGGGAAAGCCGTGATGCTTGATGAAATATAAACTATGTACAGTCATTACAACGGCAAGTTGAG

Fln Alignment:

Contig612___QNASAKTSEGSPKQTKDNIQNSEPPKEDYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEI
B8LLM2________________QSTILSTGESSPKQTKDIVKTPEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
114	75		25		0.996473
248		33		66	0.997452
249	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain